barSeed - Barley Seed Development Database

Probe CUST_35279_PI390587928

Source Contig U35_9616

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35279_PI390587928	Hv_44K_v2	CTTTTGCTAGGACTTTTTGTGGTCTTCATGCTAGAGAAATCGAGCCCGGTGTTCTATATC	757	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.979	1.056	1.583	1.581	0.683	0.576
Raw	89.042	134.788	197.936	305.079	46.308	43.670

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54979.3	1115	7e-23	285 - 344	98	59 / 60	minus	ABC12074
MLOC	MLOC_54979.2	1748	7e-23	912 - 971	98	59 / 60	minus	ABC12074
MLOC	MLOC_54979.1	1804	7e-23	972 - 1031	98	59 / 60	minus	ABC12074
JLOC1	JLOC1_35432.2	1940	4e-23	794 - 853	98	59 / 60	plus
JLOC1	JLOC1_35432.1	1932	4e-23	772 - 831	98	59 / 60	plus
Harvest21	ABC18886	857	3e-25	758 - 817	100	60 / 60	plus
Harvest35	U35_9616	858	3e-25	758 - 817	100	60 / 60	plus

Contig Sequence (858 bp)

>U35_9616 858 Hv_44K_v2
CGCACGCACGCACGCCGCCCCGCTTTCCTTGGCCCGCTCGACTGCTCCTCCGCCGCCGGA
GCTCCGCCCTCCCGTCCGCTGATCGTCCCCAGCCCCCCTGCCGGCCATCCACAGCCCGAC
CCCATCCCTCCCTACCATCTCCTCCGCGCGGCCCCGTCTCGTCCCGCCCTGCCTTCCCCT
GCCGCGCGGCCGTCCTTGGAAGCGATGACGGCGGCGGCAGGAGTCGCCGGCGAGTCGTCG
GGGACGAAGACGAAGAAGCTTAAGGTTGCTGTCATCCACCCCGACCTTGGAATCGGTGGT
GCTGAGAGATTGATAGTTGACGCGGCATGTCAGCTTGCTGCCCATGGGCACGATGTTCAC
GTTTTCACATCACACCATGACAGAAATCGGTGCTTTGAGGAAACTGTCTCTGGTCTATTC
CCAGTTACAGTATATGGAGATTTCCTGCCTCGCCATGTGTTTTACCGCTTTCATGCTATC
TGTGCTTATCTTCGCTGCATTTTTGTTGCCCTCTGCGTGCTACTTTGGTGGCCCTCCTTT
GACATCATATTGGTAGACCAGGTTTCTGTTGTGATTCCACTTCTTAAACTAAAGGCATCA
TCAAAGACAATTTTTTATTGTCATTTTCCTGATCTGTTGCTTGCACAACATACAACAATC
CTTCGAAGGTTATATCGCAAGCCAATTGACATGATTGAGGAAGCTACGACTGGTATGGCA
GATTTGATTCTAGTCAACAGCAAGTTCACCGCGGCAACTTTTGCTAGGACTTTTTGTGGT
CTTCATGCTAGAGAAATCGAGCCCGGTGTTCTATATCCAGCGGTCTCCGTTGAGCAGTTG
CATGAACCTCATGATTAT

Homology of Contig U35_9616 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g49960.1	419	5e-138	protein\|glycosyl transferase, group 1 domain containing protein, expressed
Brachypodium v1_2	Bradi5g19840.1	430	6e-136
Arabidopsis v10	AT1G78800.1	403	4e-110	UDP-Glycosyltransferase superfamily protein \| chr1:29625859-29627941 REVERSE LENGTH=403