- Probe CUST_35277_PI390587928
- Source Contig U35_9618
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35277_PI390587928 | Hv_44K_v2 | CGAAATAGGTAGCGAGGCTTTGTGTAAATTTTTGTTCGGCTCTTGTTCACTGTTGATTTA | 561 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.201 | 2.520 | 1.521 | 0.631 | 0.178 | 0.205 |
| Raw | 642.052 | 1180.986 | 594.509 | 388.590 | 38.846 | 49.464 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK357608 | 1896 | 2e-24 | 1747 - 1806 | 100 | 60 / 60 | plus | ABC19806 |
| MLOC | MLOC_73926.1 | 1624 | 2e-24 | 1500 - 1559 | 100 | 60 / 60 | plus | ABC19806 |
| MLOC | MLOC_73926.2 | 3533 | 2e-24 | 1417 - 1476 | 100 | 60 / 60 | plus | ABC04194 ABC19806 |
| JLOC1 | JLOC1_49245.1 | 2202 | 8e-25 | 1686 - 1745 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_49244.2 | 2470 | 8e-25 | 1399 - 1458 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_49244.1 | 2529 | 8e-25 | 1458 - 1517 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19806 | 693 | 3e-25 | 562 - 621 | 100 | 60 / 60 | plus | ABC19806 |
| Harvest35 | U35_9618 | 693 | 3e-25 | 562 - 621 | 100 | 60 / 60 | plus |
Contig Sequence (693 bp)
>U35_9618 693 Hv_44K_v2 GCGCCAGTTTCAAAACCATTCTTCTCAGATGGCTGCACTTGATTTCATTGTATCCACCGC TAGTGATGTTTTCCTTCCTACTTACGATGGTAACATGGCAAAACTTGTTGAAGGCCACAG AAGGTTCCTGGGTTTCCGAAAAAGTGTGTTGCCAGACCGACGGAAACTAGTTGAACTTAT AGACTTGTACACCAACAAGACAATTTCTTGGGAGAATTTTACATCTTCTGTCCAAGAAGT TCATAGAGGCCGTGTGGTTCAACCATCCTGTCGGCGAAAACTCGAAAACAAGCCGAAAGA GGAGGATTACTTCTACTCTAACCCCCATGAGTGCTCGGCCAATTCAAGCCTGTGCAGTGG AACCAAGAATACAGTCACTGTAAGGTGAGCACATTTGCCGCCTCGCCTGTGCAAGTTACT GTTGGTGATGATCCTCGGACTGAAGCCGGCATTCGGGCAGAGTCCCCACGATCGTCTAAC CAGTGTTCCCAGTGTTCTGTTGTATAGGTCAGGTTTTTCTTCTTTCAATTCTGCAATCCA TTCATTTATGTTCAAGCTTGCCGAAATAGGTAGCGAGGCTTTGTGTAAATTTTTGTTCGG CTCTTGTTCACTGTTGATTTATTCATGATGATGATGTCGAAAGGGATATACAATTGCGAC GGTGACCAATTGAGAGAAAAAAAAAAAAAAAAA
Homology of Contig U35_9618 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g07310.1 | 467 | 2e-69 | protein|growth regulator related protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g73740.1 | 468 | 7e-75 | |
| Arabidopsis v10 | None |