barSeed - Barley Seed Development Database

Probe CUST_35274_PI390587928

Source Contig U35_9621

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35274_PI390587928	Hv_44K_v2	AATGATTTTTTGAACAAGTGGCTGAAGCAGCAAGAAGGGAAGGGGTACCCTAAGCGTGAT	532	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377027	3171	2e-24	808 - 867	100	60 / 60	plus	ABC10067 ABC10068
Harvest21	ABC19233	656	3e-25	533 - 592	100	60 / 60	plus
Harvest35	U35_9621	656	3e-25	533 - 592	100	60 / 60	plus

Contig Sequence (656 bp)

>U35_9621 656 Hv_44K_v2
CGCCTCCGTCTCACACAATCCGGCCGCCATGGTACACGAGACAAGATCACGGACTCATGC
GACCGAAGAAGGGAAAACTGCCCCAAAGAAACAGAAGGAAGAACACAAAGAGCAGGAAGG
GGGGCAGGAGCGTCCCTCCAAGAACAAGAAGCCGGTCGAGCCTGAGGCGGAAACAAAGAC
CAAGAAACACAAAGGTGGGGAGTCTGAGCTAGATGGGAAGGACAACGCTACGAAAGAGTA
CACCGACTTCTGCAAGGCCATAAGAGAGCACCTCTCTGCGGAGGACATGCGCAAGATCCT
CGAAGCCAACGGGCAAGACGCTTCGGGATCGGAAGATGCAGTTGTTTCAAGCTGTGAGGA
TATGATGTTTTATGGGCCTCTCGAGAAGTGCCCAATTTGTGGTGGTCAGCTTGAGTGCAA
GGGGTGGAAATACAAGTGCACTGGCAAATACAGTGAGTGGGCAAGCTGCATTTTCAGCAG
CAATAGTCCTCCAAGGAAATCTGATCCTATAAAGGTGCCGGAGGATGTCAGCAATGATTT
TTTGAACAAGTGGCTGAAGCAGCAAGAAGGGAAGGGGTACCCTAAGCGTGATGTGGATGA
AGAGGCCCATATCTTCTCAGGCATGATGGTTGCGCTGTCTGGACGGATGTCACGCT

Homology of Contig U35_9621 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g32860.1	832	6e-85	protein\|poly synthetase 3, putative, expressed
Brachypodium v1_2	Bradi3g44840.1	825	6e-113
Arabidopsis v10	None