barSeed - Barley Seed Development Database

Probe CUST_35271_PI390587928

Source Contig U35_9624

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35271_PI390587928	Hv_44K_v2	ACTGGGTGTTGAGACTCGCAGTACTCTTTTCTTGAGACAGAATTGTTCACACACAAAAAA	1513	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.182	1.395	1.188	0.944	0.337	0.376
Raw	1345.121	2398.037	1819.093	2270.089	285.150	344.843

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_40210.1	955	2e-24	735 - 794	100	60 / 60	plus	ABC20980
MLOC	AK367093	1583	3e-21	1530 - 1583	100	54 / 54	plus	ABC20980
JLOC1	JLOC1_26271.1	878	8e-25	746 - 805	100	60 / 60	plus
Harvest21	ABC20980	1623	3e-25	1514 - 1573	100	60 / 60	plus	ABC20980
Harvest35	U35_9624	1623	3e-25	1514 - 1573	100	60 / 60	plus

Contig Sequence (1623 bp)

>U35_9624 1623 Hv_44K_v2
CGGAAAGGAAGCCTTCATCTCGGAGCAATCCCCTCATCCAATTCGCCCAAATCCGCATCA
GGCTGCTAACAGAGAGAGAGAGAGAGAGATGGGTAGGGCAAGAAGGGGAATGGCGGGCAA
GGGCAAGAGGAGGCCGCGTGCTGCGGCGAAGGCGGCGGCCGTGGCCGGCGACGGACACGA
GGAAACCAAAGACGGGCCTGAGAAAGCCGCCGCCGGCGGGGGCGGCTTCTTCTGCTGCTA
CCTCCTCCGGTCGCTCTGCCCGCGCAGCAAGAGCCGCACCTACATCGGGTTCACGGTGAA
CCCGCGGCGGCGGATCCGGCAGCACAACGGCGAGCTCCGGTGCGGCGCCTGGCGGACCAA
GCGCGGCCGCCCCTGGGAGATGATGCTCTGCATCTACGGCTTCCCCACCAACGTCGCCGC
CCTCCAGTTCGAGTGGGCGTGGCAGCACCCAACCGAGTCGCTGGCCGTTCGCAAGGCAGC
CGCCGAATTCAAGTCGCTGGGCGGCATCGGCAACAAGGTCAAGCTCGCCTACACCATGCT
CAACCTCCCTTCTTGGGAGAACTTGAATCTCACGGTGAACTTCTTCTCCACCAAGAATAC
CAAGTTCACCGCGGGCTGCCCAGCCCTCCCCTGCCACATGAAGACTGTCGTTAGCCCGAT
GGAGGATCTCCCGTGCTACGTCGAGGGCCTTTCATCCGAGGACGATATTATGGAGCCTAG
AGAGGATGAAGAAGAACCAGATGCGGCTGTTGGCGGTGATGCTTCTGATCATGGTTTGCG
GACACTGGATTTGGAAACCGGAATTGTAGGAGGTGAATCAGACACTGATGACTCTTTTGT
TCCAATGGAACGGAGTGAGGTCTTTGCATCAAGAATTTCAGAATCCTCTGCAGCCCAACC
AGTGGAAGAAGAAAACAGAATTGCTGGCTGTGATTTTGAATATACCATTGATGACTTCGG
TGAATCAGACACTGATGAGTTTTTTGCTCCGATGGAACGGAATGAGGTTTGTGGATCAAG
AATTTCAGAATCCTCTCTGGCCCAACCAGTGGAAGAAGAAACCAGAATCGCTGACTCTGA
TGTTGAATATCCCATTGATGACTTCGGTTACATGGAATGGAGCGGAATTCACGAAACACC
GGAGCTGCACGTGTCTAGAACACCACCTGGATGTTCCTCGAGCTCGTGCAGCAATGATGC
TGCTGGAAGATCAGTAAATTGTGTGACAGGGCAAGCATCTCCAGTGTTGAAGGCAGGTTC
AGACGATGGTAACCTTTTCTTCCATGAAATTGATGTGGTAGACTTGGTTACACCAGTCGC
CCGGTTTGCTAGAGATTGCAGCAAAGCGGCCAGCATTTGCCCCAAGATTATTGATCTGAC
AAACTCCCCTATTGTCATTGAGTTGTAATGCTTTGCTGGACTAACCCAGTACAAAATCTT
GTTGTAGTAAAATGTTATCATAGAATAACAGCCCAGATGGGACAAGCGTATACAGTAGGC
GAATTTGTAAAAGACTGGGTGTTGAGACTCGCAGTACTCTTTTCTTGAGACAGAATTGTT
CACACACAAAAAAAGTATTCTTGTTGTTTTATGATAAATAATGTATTGGAGTTCTACTAA
TAT

Homology of Contig U35_9624 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g12710.1	442	7e-124	protein\|GIY-YIG catalytic domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g53730.1	394	2e-165
Arabidopsis v10	AT2G30350.2	368	1e-71	Excinuclease ABC, C subunit, N-terminal \| chr2:12934237-12935742 REVERSE LENGTH=368