barSeed - Barley Seed Development Database

Probe CUST_3526_PI390587928

Source Contig U35_32475

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3526_PI390587928	Hv_44K_v2	TGGAGGACCTGGTGGATAAGGCTAGGGTTTGGGCCGTGGCTTTCGCGCCGCGGTGGTCGA	386	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.984	1.202	1.193	0.984	0.658	0.659
Raw	93.920	154.708	154.099	181.189	47.431	51.208

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356297	2981	7e-23	369 - 429	98	60 / 61	plus	ABC12533
MLOC	MLOC_74755.1	2519	7e-23	2414 - 2474	98	60 / 61	minus	ABC12533
MLOC	MLOC_74755.2	2707	7e-23	2602 - 2662	98	60 / 61	minus	ABC12533
JLOC1	JLOC1_49841.3	2999	4e-23	80 - 140	98	60 / 61	plus
JLOC1	JLOC1_49841.2	2769	4e-23	80 - 140	98	60 / 61	plus
Harvest35	U35_32475	446	3e-25	387 - 446	100	60 / 60	plus

Contig Sequence (446 bp)

>U35_32475 446 Hv_44K_v2
ACAAACAGAAAACGCTCCCAGGGAAACCCCTCCCTCCCTCCCTCCCCGGCAAGTCACGAC
TCACGCGTCTCCCACCTCGCCGGCGCCGGCCGCCCGCTCCACCGCCGCCGCCACCGCCAT
GAGCGCCCTCCAGGCCTCCCTCCTCCTCCGCGCTCTCCCCTCGCCCCTGCCCCATCGCCG
CCGGCCGCCACCAGCCCCCGCTTCCGTCTCCTTCCCTCGCTCCTGCCACCACCGCCGCCC
CCCGCTCTCCCTCCGCGCATTGGCCGCCGACGGCCCCCAGACTCCACCCTCTCCCGCTCC
CGAGCCTCCCGCCGCGGCTGCGGGGGCGGCCGCTCCGGAGGCGGAGGTCGAGACGGGCTC
CGCTGCCCGCGACGGGAAGGAGGAGCTGGAGGACCTGGTGGATAAGGCTAGGGTTTGGGC
CGTGGCTTTCGCGCCGCGGTGGTCGA

Homology of Contig U35_32475 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None