barSeed - Barley Seed Development Database

Probe CUST_35261_PI390587928

Source Contig U35_9636

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35261_PI390587928	Hv_44K_v2	CCACTATTTGGTAGCACGATCCCAACTTTTGGTTTCAGTACAGGAGCTGATCAGATGAAT	1155	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.029	1.213	2.283	2.107	0.565	0.482
Raw	61.504	117.532	188.560	280.329	26.578	24.309

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16145.1	3059	2e-24	2486 - 2545	100	60 / 60	plus	ABC18383
MLOC	AK361911	3703	7e-23	2983 - 3042	98	59 / 60	plus	ABC18383
JLOC1	JLOC1_11103.2	2957	8e-25	2154 - 2213	100	60 / 60	plus
JLOC1	JLOC1_11103.1	3444	8e-25	2641 - 2700	100	60 / 60	plus
Harvest21	ABC21016	1215	3e-25	1156 - 1215	100	60 / 60	plus
Harvest35	U35_9636	1215	3e-25	1156 - 1215	100	60 / 60	plus

Contig Sequence (1215 bp)

>U35_9636 1215 Hv_44K_v2
GCCTCGTGCCGGTTTATTCACCTCTCCATTTATTTTATTTGAAAATTGTTGAAGCCTGGA
TATTGATTTATTTGTCTTTGCAGGATTTTGAGACAAGTTTCAGAAGAAAGCTCAGTTTCA
GACAAGCACAACAAGAAGTTAAATGGAGAAATTCCACCGATTTCTTCCAAGGGTGCTGGA
CATGTTGCATCATTCACCAGTAACCCTGTAACCTTAAGTAATGGGCTAGCACATACATCA
AAATCAACTGCCTCTGCTGTTCTGGCTTCTGATGGATCGAACAACTCATTTTTGTCTACA
AATACTGTCTCATCAACTTCTTTATTGCCGCCATTCTCGTCTCAACCTGGTCTTGAGACC
TCATTCACTTCAGCACAGAAATTTGGTGGTATTCAATTTAAAGCAGAGCCTATCATAACA
TTGCCATTCAGCATGCACAGCAATTCAACTGGAGGTAGTTTCACTTTCTCTAATACTGGT
CCAAGTAGTTCATCGACATCATCAAAAACATTTGCCAGCATAACTTCCCAATTGGCTAAA
GCACCAACATCTGGAAGTGCCAATGCACCTTACAATTTCTCGCCAAACTTTGGTGGTGCA
AGTTTGTTAGCTGCCCAGGACAAATCCAAGGTAGGAAGCAGCACTGCCGCACTTAATTTC
TCTCCGCACTTTGGCAGTGTGAATTTGGTCGCTTCTCTGGATAAGTCCAAAGTGACATCA
CCTGAATCAATGTTGTTGGCTGGAAACCAGTTTGCCCGACCAGGAAATAGCAATTCATTG
TGCACACAGAGTTCAGCAACTAAGTCCGACTTGATGTCTCCGGACAAATCAAACATGGGG
AGCTTACCATTTGGTTCAGCACCTCTGAGCCCTAGTACTTTCAGTTCGAGCTCTGTAGTT
TCTTCCACAGCTGCTTCGGGCTCGGCCTCTGTGACTACAACTACTCCACCGCCTGTGCCG
TTTATGGCTTCTTCTGCTTTGGGATCTAGCAAGGCATTCTCAGTGTCACCAATATTTGGC
AGCAATCCAATCACGACTGCTCCATCATCGTTTGGCATGCTGAATAATGGTTCTGCTATG
CCCTTTAGCCCCTCCAGCACTGTATTTTCATTCACTTCGGCTACACATATAATACCAGAT
CCACCACCCTCAACACCACTATTTGGTAGCACGATCCCAACTTTTGGTTTCAGTACAGGA
GCTGATCAGATGAAT

Homology of Contig U35_9636 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g07760.1	1073	2e-92
Arabidopsis v10	None