barSeed - Barley Seed Development Database

Probe CUST_35253_PI390587928

Source Contig U35_9645

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35253_PI390587928	Hv_44K_v2	CTAACAGCAACACCAGTTCAAGTGGCAACAGTAAATTGAGTAAAGGACCCCCTAACAGCA	550	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366166	2872	2e-24	2429 - 2488	100	60 / 60	plus	ABC05973
JLOC1	JLOC1_8823.1	493	6e-21	114 - 169	98	55 / 56	plus
Harvest21	ABC33876	616	3e-25	554 - 613	100	60 / 60	plus
Harvest35	U35_9645	888	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (888 bp)

>U35_9645 888 Hv_44K_v2
GCGCGCTCATCATCGCCGGCGTCTTCGAGGCCGTCATCGGCTTCTTCGGCATATGGAGGG
TCTTCATAAGGTTGTCCAGCGACTCCTCACTCCCTCGTGTAGTCGGTCAATAAGCACAAC
AGCGGAGCCAGATAAGTATGGAGTTCACGTCCAATTTTACATCTGACTGTTGTGAGGAAA
GAACAGTTTGTAGATTATGCGCCTTGTAGACGAACACCAGAGATTGTGGGGCAAGGAGTT
GGAAGAAATAGCGATGGAAGTACAGTTAAATCCATCACAAGCTACAGACCTATCGTTCTT
AGTTCAGTAAAGAGGGCTCCTGTCTTTCAGGATGAAAGAGTGGGCTTCTCTCTCGTGCTT
CCCTCTGTTTCAGAAGATGAAAGAATCCATGTTTGCAGTGATATATGTGCATTGAATAGT
GAAAATGTCACCAACAGTAGTCTAGGAAAAGCTGACAGGAACAGTTCAAGTGGCAGCTGT
GAATCGAGTAAAAGATCACCTAACAGCAACACCAGTTCAAGTGGCAGCAGTGAATCGAGT
AAAAGATCCCCTAACAGCAACACCAGTTCAAGTGGCAACAGTAAATTGAGTAAAGGACCC
CCTAACAGCAACACCAGTATGTCAATCACGATTTGTCTTGCACATGTTGAAGAACCAGAT
TCAGACCATTGCCAAGGGAAAGCCAAAGTCTTCTTGTGAAACTAGATTAATTGTTCAAGA
TTGAATGGGACGAAACATTATACATGATATTCGTTTCTTTGAAGTTTGATGATGGCACGT
GAGATCTTTCAATTATATATTCATTTAATTCAGTTGTAGAGGAATACAATCTATTAAAAT
TATCATGATATTTGGAGTACATTCATAACACAAAAAAAAAAAAAAAAA

Homology of Contig U35_9645 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None