barSeed - Barley Seed Development Database

Probe CUST_35247_PI390587928

Source Contig U35_9652

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35247_PI390587928	Hv_44K_v2	AGAAACATCAGATATTAAGTCGGCAACATTTGAATGAGAAGCTCCATGTGTTGAGGGAAA	614	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.434	1.464	1.050	1.055	0.552	0.747
Raw	657.495	1070.867	660.043	1072.057	188.539	282.589

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80136.1	754	2e-23	681 - 738	100	58 / 58	plus	ABC26569
JLOC1	JLOC1_53367.1	774	1e-23	681 - 738	100	58 / 58	plus
Harvest21	ABC26569	688	3e-25	615 - 674	100	60 / 60	plus	ABC26569
Harvest35	U35_9652	688	3e-25	615 - 674	100	60 / 60	plus

Contig Sequence (688 bp)

>U35_9652 688 Hv_44K_v2
GCCGCGCTCCCGCCGGCGTCGCCTCAGCAGCTCTCCAGCCGGCCAACCGCCGCACGGAGC
CCTCGCGGGACAGGCAGGCCACGTTCGGCCGCGATGGCTGCCGCCGCCGCGCCAGCCTCC
TCTTCTTCCTCCCCTGGCTGGGACTTCACCTGCAACTTTGAAGTTGACTATGGATCTGAA
GAACACGCTTCCATTGTGTACAAGACATTAGCTGTTGACAAGGAGTTGCAGCCTGATAAG
GTTCGGAGGGAGATGACTGTTTCTGGTGGCAAGCTCCTCGTGCGCTTTGAAGCAGTAGAG
GCTCGATTTCTGCGCGCGTCATTCAGCGCATTTGTTGATCTTATGGTGCTTATCACGAAG
CTTGTCGAAGAATACGGCGTAAGCAAGGAAGAGCATTCCTGATAAGCGATATGATCTAGT
TAATCATACATGTGATCATTTGGACCATCTGTATTTGCCTCGGCTCTTCTCCTGTGAAGG
TACCATGTATTGTGATTCTGAATGAAACATTTATACTCTGTAGTATGGATTACTTCCCAT
TGAAATTTCATTGTAATGAGAAAAACCTCCAGAGCCCCTGGGGTGAAAATTTCTCATGAA
ACCGGGAGGAGCAAAGAAACATCAGATATTAAGTCGGCAACATTTGAATGAGAAGCTCCA
TGTGTTGAGGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_9652 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g22027.1	105	6e-52
Arabidopsis v10	None