barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_35245_PI390587928Hv_44K_v2TTTCTATCAGCTAACAACACTCCTGGGCTGGTAAACACGAAGACATGTTTTCTGGAAAAA755GeneList: darkslateblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1982.0001.2120.6740.9251.006
Raw 10.38025.45914.02312.4064.8396.612



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest35U35_96558273e-25756 - 81510060 / 60plus



Contig Sequence (827 bp)

>U35_9655 827 Hv_44K_v2
GCTGAGACTAGTAGCTCCCCTCCCCATAGCCTAATTTAGCCCGAGCCGTCTCCTGTGCGC
CTCTTTGTCAGTAGCGGCGTCGTCGGCCTGCGGCTAAATTCCGGCAGTCCCGAGCCCCTC
TCCTCCCCCCAGGAACTCTGCTAGCCTGCCCATACCCCTAGGAAGTCGTTCCCATCGTCG
AGCTTAGCCAGGAGCCATTGGAGACCGGAGCCGCAAGTTGACAGAAACTCCCTCCGCCAT
TGTTGAAGTACTGCTCGGCCTCAAGCTCCGCAGCTGCCCCAACCGGAAAAAAATGGATGT
GGCGCTTCCCCCTGAGCATGTGCATAGCCGTAGCGTGGCGGGAGATGCTCTGTGCCGCCG
GCAACCGTCGCCGGAGTGCGACTCTGTACCTGCCCCTACACGCGCGGGAGGTAGAAGGAG
AACCCGACAAGCAGGTCCCGTCTGTCAGAATTTGAAGAGTGGATACCTACTCCAAGATGA
TGGGGGTACCTATCACCCTCTTCAAAACCCTAAGATTGCGTTTGGAGAGGAGCACGATGC
CGTCAACCCCGAAACCTAGGAGTCAAGGATAGCAACCTTGTGAGATAGGAATTTATCCAG
GTCAGCTATTCCTGTGGGAATGGAGTCCCATAGGCACTAGAGATTTCTCAAGTCTCTTCT
GCCGTCATCCTCGGACTTTTGTTCAACCCAGTAGACCTTCATGGTCTTGTAACCCAGATT
TTATATTTTTTCTTGAATATTCTGTATCAAGTAAGTTTCTATCAGCTAACAACACTCCTG
GGCTGGTAAACACGAAGACATGTTTTCTGGAAAAAAAAAAAAAAAAA



Homology of Contig U35_9655 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None