- Probe CUST_35242_PI390587928
- Source Contig U35_9658
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35242_PI390587928 | Hv_44K_v2 | TTGCATTCTGGCCTGAGCACCAAAGAGATAAAGAGCAAGACAAAGGAGAGAAATGAAAGA | 579 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.333 | 1.275 | 1.097 | 0.723 | 0.420 | 0.419 |
| Raw | 275.179 | 394.193 | 307.843 | 292.808 | 64.674 | 70.375 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369097 | 1817 | 2e-24 | 861 - 920 | 100 | 60 / 60 | plus | ABC20298 ABC23168 |
| MLOC | MLOC_64461.3 | 875 | 2e-24 | 158 - 217 | 100 | 60 / 60 | minus | ABC20298 |
| MLOC | MLOC_64461.2 | 1501 | 2e-24 | 783 - 842 | 100 | 60 / 60 | minus | ABC20298 ABC23168 |
| MLOC | MLOC_64461.1 | 1576 | 2e-24 | 862 - 921 | 100 | 60 / 60 | minus | ABC20298 ABC23168 |
| JLOC1 | JLOC1_42331.2 | 1615 | 8e-25 | 658 - 717 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42331.1 | 1616 | 8e-25 | 659 - 718 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20298 | 707 | 3e-25 | 580 - 639 | 100 | 60 / 60 | plus | ABC20298 |
| Harvest35 | U35_9658 | 707 | 3e-25 | 580 - 639 | 100 | 60 / 60 | plus |
Contig Sequence (707 bp)
>U35_9658 707 Hv_44K_v2 GGACCAGCTAGGGTTGGCCGGCTGCCCGCTCCGGCCCCAGGTAAACTCTGCTCACTCCTC CTCCCTTCCTCCACTGTTCCCGCCGTCCGTCCGACGCCCTACCGGAAGCAGCCTCCTCCC TCCTCCCTCCTCCATCAGACTCGCTGCGGCTTCTCCATCCATATTCCCGAAACCCTCTCT GGCCAGCAGCGCGAAAACCTTCGGGAGGCTCTCTCTTCGTGCGGGCGAGGCGCCGACGAC AGGGACCAGCGGTCCCCAGGCTCCTAGTTATTCCCCGGTTCGCAGGCCATGGCGTCTGCA GCGGAGGCCGCCGGAGAGGCCTCCACCTCCGCGGCCGAGGTGCGGGATAAGCCCGTCGTC GTCCGGGTCAAGCGCAAGCCCTCGCAGGCCCGCCCCGATGCTTTCTGGCTGGAGATCAAT GAGAGGCCCATGAAGAAGGCCATGCTCGATTTCTCGAGCCTCTCCATCTCCCAACCCTCT TCCACTGCCCAAGAGGAACCACGGGTGAAGAAGCTTCTTGTCCAGCATGTCGAGACAGTC CATCATTCTGGAGCTGTTGAAGACGTTCTTCACTCCCTTTTGCATTCTGGCCTGAGCACC AAAGAGATAAAGAGCAAGACAAAGGAGAGAAATGAAAGAATGAAGCAAGACANAAAACAA GACCAGCTACGTTCAGCAGCCAGACAGAGGCATGAGAATCTTGGAAG
Homology of Contig U35_9658 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g01940.3 | 257 | 1e-53 | protein|expressed protein |
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |