barSeed - Barley Seed Development Database

Probe CUST_35241_PI390587928

Source Contig U35_9659

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35241_PI390587928	Hv_44K_v2	CCGAAAATTCCGGCGTAGATCCATGGTCTCCAAGCTGCAGTATTACCTGCCTCTCTTCGG	507	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356011	1490	7e-23	454 - 514	98	60 / 61	plus	ABC36884
JLOC1	JLOC1_14993.1	1652	4e-23	1117 - 1177	98	60 / 61	minus
Harvest35	U35_9659	567	3e-25	508 - 567	100	60 / 60	plus

Contig Sequence (567 bp)

>U35_9659 567 Hv_44K_v2
AAGGTTGGACCAGCCAGACGCCACACCGAAGCAAACCCTCACCACTCTCTCCTCCGTGCC
GCACCATTCCCTCGCCGTCGGCGCCACCTCGCCGTCGCGACGCCATGCTCCGGCTCCGGC
GCAGCGTCCTCGCCAAGCTCCTCTCGTCTCCCTCCGTCTCCCCTCTCCACCGCCTCATCT
CCACCACGGTGTCGGCCCCCGCCGTTTCCCCGGACCCTAGCAGCTTCGCCGTGGAGGAGT
ACCTCGTCTCCACCTGCGGCCTCACCCGACGGCAGACCGTCAAGGCCTCCCCCAGGATCT
CCCACCTCAAGTCCCCCGCCAACCCCGACGCCGTCCTCGCCTTCCTCGCCGGCCTCGGCT
TCTCTGGCGCCGACATCGCCGCGGTCGTCGCCAGGGACCCGCAGTTCCTCTGCGCCAGCG
TGGAGAGGACGCTGTCCCCCGTCGTCGCGGGGCTCGCCGGCCTCGGCCTGTCGCCGTCTG
AGATCACCCGCCTCGTCTCGCTCGCCCCCGAAAATTCCGGCGTAGATCCATGGTCTCCAA
GCTGCAGTATTACCTGCCTCTCTTCGG

Homology of Contig U35_9659 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None