barSeed - Barley Seed Development Database

Probe CUST_35240_PI390587928

Source Contig U35_9660

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35240_PI390587928	Hv_44K_v2	TACAACTCATGTTGACAGGCTTACTGCTGAAAATGAGAATTTTAAGACACGGTGTTTTTT	991	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.956	1.549	1.161	0.640	0.412	0.329
Raw	232.573	250.875	186.106	145.520	35.396	32.297

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC20373	1061	3e-25	992 - 1051	100	60 / 60	plus	ABC20373
Harvest35	U35_9660	1061	3e-25	992 - 1051	100	60 / 60	plus

Contig Sequence (1061 bp)

>U35_9660 1061 Hv_44K_v2
TCAAACCAGCAATTTTTGAGAACAGTAATGTTCTCCAGCAACTTCGATGTGGGGGGGTGC
TAGAGGCAATAAGAATAAGCTGTCTAGGATATCCGACAAGGCGGACATTTGAAGAATTTG
TTGATCGCTTTAGTGTTTTACGACCAGAAGTTCTTGGTTTATGTCATGATGAAGTTACTG
CCACAAACATGCTCCTTGAGAAAGTAAATCTCACAGGTTATCAGATAGGGAAAACAAAAG
TGTTTCTGCGTGCTGGTCAGATGGCTGAATTAGATGCTCGGAGGACTGAGGTCTTGAGCT
ATTCTGCTAGTAAAATCCAGCGAAAAGTTCGGTCGTTCCTGGCTCGCAGAAATTTCATTC
AGCTGCGAATGTCTTCTGTTCAGCTTCAGGCAATGTGCAGAGGACAAATTGCAAGGCATT
ATTATGAAGATCTCCGTAGGAAGGCGGCTTCATTAAAAATTCAGACCTACTATCGTATGC
ACTTTGCAAGGAAAAACTACAAAGATCTCTATTCTGCATCAACTACTATACAATCAGGTC
TACGTGGTATAGCTGCTCGCAATGAACTTCATTTCCGTCAGCAAACAAAAGCGGCAGTGA
TTATTCAGAGTTGCTGCCGTAGTGATTTAGCAAGCTCACGGTACATGGGCTTAAAGAAGG
CAGCGATTACAACCCAGTGTGCTTGGAGAGGAAGGGTGGCCAGAAGAGAACTTAGAAAAC
TTAAAATGGCTGCAAAAGAAAGTGGTGCTCTGCAAGCTGCAAAGAATAAGTTGGAGAAGC
AAGTTGAGGAGCTCACTTGGCGGTTGCAACTGGAGAAACGCATGAGGACCGACATGGAAG
AAGCCAAGACACAAGAAAATAAGAAGTTGCAACAACAATTACAGGAATTGCAATTCCAGT
CCAAGGAGACAAAAGATATATTAAGAAGGGAACAGGAAAATGCAAAAACAGCATTGGAGA
AAGCTGCCTTAGTACCAGAGATCCAAGTTGATACAACTCATGTTGACAGGCTTACTGCTG
AAAATGAGAATTTTAAGACACGGTGTTTTTTTNGAGGGGGG

Homology of Contig U35_9660 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g64290.1	1472	8e-146	protein\|myosin, putative, expressed
Brachypodium v1_2	Bradi3g29700.1	1515	0.0
Arabidopsis v10	AT5G43900.3	1565	8e-127	\| Symbols: MYA2 \| myosin 2 \| chr5:17657241-17667413 REVERSE LENGTH=1565