barSeed - Barley Seed Development Database

Probe CUST_3523_PI390587928

Source Contig U35_18183

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3523_PI390587928	Hv_44K_v2	AACGTGCATGGTACATTTTCTGTAAATGATGTATTTCGGTGTATACTGGCAGTCACTATT	454	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364329	1547	2e-24	1419 - 1478	100	60 / 60	plus	ABC17718
MLOC	AK368796	1101	2e-24	988 - 1047	100	60 / 60	plus	ABC17718
MLOC	MLOC_57539.1	880	2e-24	51 - 110	100	60 / 60	minus	ABC17718
MLOC	MLOC_57539.2	1605	2e-24	42 - 101	100	60 / 60	minus	ABC17718
JLOC1	JLOC1_37311.1	1268	8e-25	1131 - 1190	100	60 / 60	plus
Harvest35	U35_18183	567	3e-25	455 - 514	100	60 / 60	plus

Contig Sequence (567 bp)

>U35_18183 567 Hv_44K_v2
GCTTTCTGGTACCCAACTGACGGCAAACCATGGAGCAACTCCCAGCATTACTCAGCCAGC
TGCGACTGGTTGACTCTGGACATACAGCCCTCATTGGAAGCTGCTCGATACCGCCCAGCC
CCTAATCGTTCCTGGGATGCTGGGACCGCCTTCGCCTTGCTCCTTTCAGTGGTGGCCGTT
TGCGTGTCCATCTTTGTGGGCTACTCAGCTTCGAAGAACAAGAGTGGCGTCCAATTTACA
CAGCTTGCAGAGATCTAGTTTGGATGCAGGAAATAATTCGATTGCGTGCCAGCATTTCAT
GACCCACGGCATCCGTATGTGAGGCTAATGGGTTTGTAAGATCCTTTCACACTTGGACAG
AGGATTCCTGAGTATAGTTGCGTCGGGATAATCTACTCCCGGGAGTAGTGTAGAACACAT
AAAATACACAGTACACGCAGCCGGTTTTGATTGTAACGTGCATGGTACATTTTCTGTAAA
TGATGTATTTCGGTGTATACTGGCAGTCACTATTTTTTTTGTGGGAAAATAGAGAGATTT
GGTACTCATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18183 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None