barSeed - Barley Seed Development Database

Probe CUST_35237_PI390587928

Source Contig U35_9663

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35237_PI390587928	Hv_44K_v2	CATTCTATCGAGTCCATGTGCATGCAAATGAAGAAGAAATTGAAGCTATCTTTGCTGAAA	763	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53880.2	3460	2e-24	3350 - 3409	100	60 / 60	plus	ABC20231
MLOC	MLOC_53880.1	3794	2e-24	3693 - 3752	100	60 / 60	plus	ABC20231
JLOC1	JLOC1_34643.1	2453	8e-25	2321 - 2380	100	60 / 60	plus
Harvest21	ABC20231	837	3e-25	15 - 74	100	60 / 60	minus	ABC20231
Harvest35	U35_9663	837	3e-25	764 - 823	100	60 / 60	plus

Contig Sequence (837 bp)

>U35_9663 837 Hv_44K_v2
TTGCATCAGAGCCATCTTCAAGGGAATGGTACATGAATGGCGCATCAGGGGTGGATATGA
TGTTGAATGGTGGTTTAGGGCATGGACTACGTAATATGAGTTTGGAGAACGCTAATTCTG
CCAAGCAGCAGCAGTTCATGCAAGCAAACCATCAACAAAGTTTTGTCTCCAATCCTGTAG
AGCTGGCTGCTAATGGTTGGGGTGGTACATGGGGCCCTGGAGGTGCATCGTCTTCCCAGG
CTGGGGCGTCGGCACATGGGACATTTAGAGGAGGATGGAGCTCATCCGAGCCCTCTCCTG
CTTTATCTCATGCTGATTGGAGAGGCAATGCGCCAGCACCGTGCGACTACACTTCAATAG
ATTGGAGCCTCGACACAACATTGTTAAACCCTGCAGCAAAGAGCGAATGGCTGTCTGACA
CATGGTCAACCATGTTCATGGGTGGCAGATCCACAAGGCCTGCTGGGGGAAACCTTGGTG
CGGGAGGCATGAATGGGTTGCTGCATGAGAGCAGCAGTAGTCTTCCAATGGATCCTGCTC
CATCACCCCGCCCTTATGAGTGGCCTTCTTTCTGCAGGGGCGGATCTTCCTAGTTCCAGA
ACCCTGTAGGTAAGAAAGAAGCCATTGAATAAGAAAAAGTAAAAGATGTCATTTGTTTCT
GTTCTTGTTTTTTGTCTCGTTGGAGTTGGTTGAAAAGAGTTTTTACTTCTTGTGTATTGA
ACCGTGTTTGTGTACCTTTTGACTGTTGGCCGAGATAAGTCTTCATTCTATCGAGTCCAT
GTGCATGCAAATGAAGAAGAAATTGAAGCTATCTTTGCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_9663 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33850.1	618	2e-79	protein\|UBA/TS-N domain containing protein, expressed
Brachypodium v1_2	Bradi2g25540.1	620	5e-86
Arabidopsis v10	None