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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_35236_PI390587928Hv_44K_v2TACGAGGATGTAGGTGTATGTGTAAAATTTCAGGATGAAATACCTTAAATTGCGAGCTGT661GeneList: lightgreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.5700.9460.5810.8681.3902.197
Raw 7.59820.72111.25923.82515.20825.275



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_25110.16282e-2460 - 11910060 / 60minus None
MLOCMLOC_25110.28432e-2433 - 9210060 / 60minus None
MLOCMLOC_25110.36793e-21618 - 6779758 / 60plus None
JLOC1JLOC1_17201.19808e-25750 - 80910060 / 60plus
Harvest35U35_96648353e-25662 - 72110060 / 60plus



Contig Sequence (835 bp)

>U35_9664 835 Hv_44K_v2
GAGTCAATGTTGACNTACATCATCACGAAGCAGTAGCCGCTGGTAGTCGTCCAGCCCAGC
AAGCTTGCATTGTTCAGGATGGAAGTACCATTCGGGATCCTCTTTGACGCGCTGAAGGAA
AATCTTTTCGTAAACATGCAGAGGGTCCAACTCCTTGTTCCTTCGTGCATTCTCCAGTTC
CTCTCCGGAAGAGGATAACTCAAGGGCTTCGATGTAGTACCGGGAGAGCCGGTGGTAGAC
ATCAACCTGTTGCCTTTCATCATAGGTAGAAAGGAATACTGGTAAATTAGCAGTGTTCAA
CTTCTCAATGAGATATGCGCTCTTCGTCAAGATGGACTCTTCGTCCAGATCAAGGAGGTT
TTGTAATTCGTCTTGTCCCCGTTCTTGTTCGTGGTCAGTTAGAACCTTCTTCTCTTCTGT
AGCTGGGATTGGGATGTTTACCGTCTTCTCTTGTGTCAGCGGCCGCTCACCAACATCGAC
TACCTCGAGAAGGGCCTGCCATGGGAGGAATTCAAGAGCCGCCTCCAATAGCCAAAATCA
TGCGAAAATCATGGTGGCGGGATTGTAGGGAGTAGGGCATTTTGGCGGCCGAGCTCCATC
AAGACTTCAGTTAAAATCAAAATCCAGTTCCAAAAGATTCCTGAAAAATTATATACATGT
ATACGAGGATGTAGGTGTATGTGTAAAATTTCAGGATGAAATACCTTAAATTGCGAGCTG
TATAAAAAAAAAAGATCATGTACTTTTTTTTCGATGAACTACACATGTGCTAAAAGGCGC
ACTGGGAATTTAGCGGCCGCTCGAGCATCTTGTAGAAGGCCCAATTCGCCCTATA



Homology of Contig U35_9664 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None