barSeed - Barley Seed Development Database

Probe CUST_35227_PI390587928

Source Contig U35_9673

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35227_PI390587928	Hv_44K_v2	AAGATGTCAAGGAAGGTTGACCACTCTTTTGCAGTTCCCTTTTTCTCTTGACATGACACC	953	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38901.3	1646	3e-22	745 - 803	98	59 / 60	plus	ABC43772
MLOC	MLOC_38901.1	1896	3e-22	886 - 944	98	59 / 60	plus	ABC43772
MLOC	MLOC_38901.4	1972	3e-22	930 - 988	98	59 / 60	plus	ABC43772
MLOC	MLOC_38901.2	2854	3e-22	1844 - 1902	98	59 / 60	plus	ABC43772
JLOC1	JLOC1_25333.4	1865	1e-22	811 - 869	98	59 / 60	plus
JLOC1	JLOC1_25333.3	1999	1e-22	945 - 1003	98	59 / 60	plus
JLOC1	JLOC1_25333.2	1932	1e-22	878 - 936	98	59 / 60	plus
JLOC1	JLOC1_25333.1	1807	1e-22	753 - 811	98	59 / 60	plus
Harvest21	ABC21032	1016	3e-25	954 - 1013	100	60 / 60	plus
Harvest35	U35_9673	1016	3e-25	954 - 1013	100	60 / 60	plus

Contig Sequence (1016 bp)

>U35_9673 1016 Hv_44K_v2
TCCTCGCCCAGTCCACGGCGCTCCACCCCCCGTCCGCCTCCGCCTCGCCACCGTCCGCGT
CCGCATCCCCCGCCGCGCCCCGCAAGCGCCGGCGCGTCGACTACCGCGCCTGGGCGCCAG
ATCCGGCCGAGGTCGCGCTCGTGCGATCCGCCGATCCCACCACCTCCGCGTCCGCCGCCG
AGCCGGCGGGCCTGCGCGGGCTCAACAACCTCGGCAACACCTGCTTCATGAACTCCGTGC
TGCAGGCGCTCCTCCACGCGCCGCCGCTCCGGAACTACTTCCTCGGGGATCGCCACAACC
GCTTCCTCTGCCCGCGCCGCACGCCCATGAGGCACCGTACCACGGATGCCGAGGCCAAGG
CCGCGTGCCTCGCGTGCGATCTCGACGAGATCTACTCTGCCACCTTCTCGGGGGAGCGCA
CGCCATACAGCCCCGCCAAGTTCCTCTATAGCTGGTGGCAGCATGCAACAAACCTTGCAA
GCTACGAGCAACAGGACGCACATGAATTTTTTATCTCCATCCTTGACCATATTCATGAAA
ATATAAAGGATGATCAGCCTAAATCACATGAACAAGGCGATGGAGACTGTTGCATTGCAC
ACCGGGTGTTTTCTGGTATCCTGAGATCAGACGTCATCTGCACAAATTGTGGGTTCTCAT
CAACAACGTTCGAACCTTGCATGGACGTCTCTTTAGACTTGGATTCTGGGCATAACAATT
GTCTTGGTGTTGCAAACCCAAAGCCGCATGCGCGCAACGGCATGAGTTCCAAGGTATCTA
CACTCATGAGATGTTTGGAGCGGTTTACCAGGGCTGAGAGGTTAGATGCTGAACAGAAGT
ACTTCTGTGAACGTTGCAAGGAGAGGCAAGTCTCCCTGAAGCAAATGTCCATTCGGAGGC
TTCCGTTAGTTTCTTGCTTTCACATCAAGAGATTTGAGCATTCAACAGTTAAGAAGATGT
CAAGGAAGGTTGACCACTCTTTTGCAGTTCCCTTTTTCTCTTGACATGACACCTTA

Homology of Contig U35_9673 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g55360.1	371	3e-163	protein\|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Brachypodium v1_2	Bradi5g23920.1	564	0.0
Arabidopsis v10	AT5G10790.1	557	9e-99	\| Symbols: UBP22 \| ubiquitin-specific protease 22 \| chr5:3410638-3412559 FORWARD LENGTH=557