- Probe CUST_35226_PI390587928
- Source Contig U35_9674
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35226_PI390587928 | Hv_44K_v2 | GAAGGAAGGCTGCGAAATTTGCTTGAGATATGTAGATAGCTCAAAATTCTTTAGAATGTT | 273 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.119 | 1.867 | 1.934 | 0.908 | 0.263 | 0.303 |
| Raw | 1225.566 | 3121.495 | 2757.387 | 2099.963 | 202.631 | 257.523 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372055 | 3463 | 2e-24 | 3327 - 3386 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_81064.2 | 3067 | 2e-24 | 42 - 101 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_81064.1 | 3629 | 2e-24 | 132 - 191 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_53940.1 | 3595 | 8e-25 | 3393 - 3452 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_9674 | 464 | 3e-25 | 274 - 333 | 100 | 60 / 60 | plus |
Contig Sequence (464 bp)
>U35_9674 464 Hv_44K_v2 GTGGGAATATCAGCAAGGAGATGTTTGAACTCAATTNTGCGCTCCCTGCGAGTAGGAAGC CATGGCTGATGGGCTGGCAGCCAATCTCGAACATGATCAAGGAGAAAACTCGCCAATTGG TTTCTACTCCATTACAGTGAGGAAAAAGGAGCTGATATTTCATACTGGGGATGGGATTCG CCAAGGTGAACTGCATTGAGCTTTTTCTGTGTTGGTCGAGGAAGTCTGTGGAATTTGCTT GAGATATGTAGATAGCTCAAAATCTTTGTTGGTGAAGGAAGGCTGCGAAATTTGCTTGAG ATATGTAGATAGCTCAAAATTCTTTAGAATGTTTATGACTTGTTGTCATCTACATTCTGC ATGTATTAATTTTGTAAGAATGTTCATAACTTGTCAGTGATCATTGGATGAAAATAACTT GTCAGTGCTTAAAAGATTTTGTTGTTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_9674 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |