barSeed - Barley Seed Development Database

Probe CUST_35225_PI390587928

Source Contig U35_9675

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35225_PI390587928	Hv_44K_v2	TTCCATGGCGGCCGCCGACGACGATGGCCAGATCGACGACGACGAGTACTACGAGTACAA	203	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376061	1881	2e-24	73 - 132	100	60 / 60	plus	ABC39250
MLOC	MLOC_82053.1	3804	2e-24	447 - 506	100	60 / 60	plus	ABC39250
MLOC	MLOC_82053.2	2080	2e-24	323 - 382	100	60 / 60	plus	ABC39250
MLOC	MLOC_82053.3	2260	2e-24	323 - 382	100	60 / 60	plus	ABC39250
MLOC	MLOC_82053.4	3144	2e-24	270 - 329	100	60 / 60	plus	ABC39250
JLOC1	JLOC1_54575.2	2042	8e-25	285 - 344	100	60 / 60	plus
JLOC1	JLOC1_54575.1	2223	8e-25	286 - 345	100	60 / 60	plus
Harvest21	ABC19371	588	3e-25	204 - 263	100	60 / 60	plus
Harvest35	U35_9675	588	3e-25	204 - 263	100	60 / 60	plus

Contig Sequence (588 bp)

>U35_9675 588 Hv_44K_v2
GCACGAGGGGCTTCCAAACGACTCCTCCGTCACCGCCTCGCCGTCGCCATCACCCCGAAA
TCAACATGCCACCAGCCGCCGCCCCCCCACCCCGCACATGCGCTGCTCTGCTCCCACTTC
GCCTACTCGCTCACGCTCACGCCACCCCAGTCTGGCACTCTCCAGCCGACGCCCACAGCC
GTAACCACCGCTGAGCACCGCTCTTCCATGGCGGCCGCCGACGACGATGGCCAGATCGAC
GACGACGAGTACTACGAGTACAACCCGCACCCCTACGGCGGCGGCTACGACATCTCCGCC
ACCTACGGCGCCCCGCTCCCGCCCTCCACCTCCACGTGCTACCCCATCTCCTCCCCCGAC
GGCGCCCCCGCGCGCCCCTCTCCGCGGCCGCGCGACTACTGGAGGCAGTGCATGCGCGGG
CTGGACTTCCTCTTCGGCCACGCCGACGGGTACGGNGAGCGGCGGATTGGGACCGACTGC
CACGGGGTCCCAGTGTACGCCAACAAGAAGGGGGGAGTGGAGGACGCCGTGGTGGTCGAG
GTGCCGCCGCCGGAAATCGGGAGTGTGCAGTGGCACGACGCCGGCGAG

Homology of Contig U35_9675 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None