barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_35223_PI390587928Hv_44K_v2GTCTTGGACTTGATCTCTCGCTATCAGAATGAATAACTTTGCATGATTCTTAGGGAAATC896GeneList: salmon
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 11.9706.7891.7230.5150.4740.449
Raw 169.867161.67633.97215.0452.6893.717



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_74474.530723e-212960 - 30199758 / 60plus None
MLOCMLOC_74474.412133e-211101 - 11609758 / 60plus None
JLOC1JLOC1_49626.113102e-211101 - 11609758 / 60plus
Harvest21ABC505594703e-251 - 6010060 / 60minus
Harvest35U35_96789563e-25897 - 95610060 / 60plus



Contig Sequence (956 bp)

>U35_9678 956 Hv_44K_v2
GAAAGCGCCTTGATGGGCACAATCGACGCCGCAGGAAGCCACAGGTAGATAGCATGAATT
CTGGGAGCTTCATGACAACCCAACAAGGTTTGTATTCAAATGCAGGGACAAGGTTCGCGT
CCTTCTCGGCTCCAAGGCCGGAGCCAAGCTGGTCCGGGATCATCAAATCCGAGGACAGCA
ATCCATTCTACAGCACGCACCAGGTTAACTTCGGCGGCGCCACGTCGTCATACTCCAAAG
AAGGCCGGCGCTTCCCCTTCCTCCACGAAGGAGACCAGATGAGCTTCAGCACCGGCGCGC
CAGCACTCGAGATCCCCGTGTGCCAGCCTCTCCTCAAGGCCGTCGCCCCGCTGCCGCCGC
CGCCCGAGAGCAGCAGCAGCAACAAGATGTTCTCCGATGGACAGTTGACGCACGTGCTCG
ACTCCGACTGTGCTCTCTCTCTTCTGTCATCCCCGGCCAACTCCTCCAGCGTCGACGTCA
GCCGGATGGTCCGTCCAAGCGAGCACGTCCCCTCTGTCCCCAGCCTGCAGTTCGGCACCT
CCTCCTGGTTCGCCTGCTCCCAGGCCTCAAGCGGCGGCGGCGCCACCGGATTCGCCGCCA
CCTTCCCCGGCGGCATGGACGGCGAGCAGCTCAACGCCGGCGGCGCGCTGGTCCCCGGCT
CCAACGACAACGAGATGAACTGCCACGGGATCTTCCACGTCGGCGCCGATGGCTCCTCCG
AGGGCACGTCGCCGTCCCTCCCGTTCTCATGGCAGTAGGAGTCTCGAGTGAAGATCAGAG
GCTGTTCTTGGGTTCTTTTGGTGATCAGTAGGCAGTAGCTAGCTGTGCCCCTTTTAGTGA
TCAGGCCTACGTCCCGTTCTTTCTGTGTTTATTCTCTCTCCTTTTCACGTTTCTATGTCT
TGGACTTGATCTCTCGCTATCAGAATGAATAACTTTGCATGATTCTTAGGGAAATC



Homology of Contig U35_9678 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi4g34667.13993e-95
Arabidopsis v10None