barSeed - Barley Seed Development Database

Probe CUST_35210_PI390587928

Source Contig U35_9692

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35210_PI390587928	Hv_44K_v2	CAACACAAATGCATGTAGTTCTGGAATCCTATAAACTTTGACACTTGTTGCAAAATTTCC	471	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51613.7	2996	2e-24	2006 - 2065	100	60 / 60	plus	ABC20795
MLOC	MLOC_51613.6	4237	2e-24	1865 - 1924	100	60 / 60	plus	ABC20795
MLOC	MLOC_51613.4	3192	2e-24	2177 - 2236	100	60 / 60	plus	ABC20795
MLOC	MLOC_51613.5	3070	2e-24	1865 - 1924	100	60 / 60	plus	ABC20795
MLOC	MLOC_51613.2	5695	2e-24	3122 - 3181	100	60 / 60	plus	ABC20795
MLOC	AK359748	2694	2e-23	2565 - 2622	100	58 / 58	plus	None
MLOC	AK374970	2842	2e-23	723 - 780	100	58 / 58	minus	ABC20795
JLOC1	JLOC1_32987.1	6030	8e-25	4825 - 4884	100	60 / 60	minus
JLOC1	JLOC1_32986.1	5313	8e-25	1864 - 1923	100	60 / 60	plus
Harvest35	U35_9692	542	3e-25	472 - 531	100	60 / 60	plus

Contig Sequence (542 bp)

>U35_9692 542 Hv_44K_v2
GGGGCACCATCTTCAACTTCTTCGTGTTCCGGTACCGGAAGAAGTGGTGGCAGAGGTACA
ACTACATCCTCTCTGCCGCGCTCGATGCAGGCGTCGCGTTCATGGCGGTGCTGCTGTACT
TCACACTGACCATGGAGAACCGGACAGTCAACTGGTGGGGCACGGCCGGTGAGCACTGTC
CTCTGGCCTCATGCCCCACTGCTAAAGGGGTAGACTTGGGCCCTGATAGCGCGTGCCCTG
TGTTCTAAGCTAAATCTCTTTCAACCTCAAGGTACAGCTACAAGATTAGTCACGATCGAT
TCCCGTTGTGTTAGTGTCATGTCATGATCAAAGATTCCTACTGTACTCTCCACCAAAAGT
GAGAGAGCAAAGCATCTCCATGTGTGTAAACTGTAAAGGTCATAGTAACCACGCAAGAGA
GACAAGACAAAAAGCTATCAGCAGCAATGGTGCTGCAATCAGTCATTTGGGCAACACAAA
TGCATGTAGTTCTGGAATCCTATAAACTTTGACACTTGTTGCAAAATTTCCTTTTAGACC
GA

Homology of Contig U35_9692 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None