barSeed - Barley Seed Development Database

Probe CUST_3520_PI390587928

Source Contig U35_32479

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3520_PI390587928	Hv_44K_v2	CACCGGCGTCAACCCTCTCGCGCAGGAGATGGCTGCTGGTGCATTGTCTATCAAGATAGG	322	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360732	4885	2e-24	331 - 390	100	60 / 60	plus	ABC16752
MLOC	MLOC_3243.1	491	2e-24	121 - 180	100	60 / 60	plus	None
JLOC1	JLOC1_1943.1	315	8e-25	121 - 180	100	60 / 60	plus
Harvest35	U35_32479	382	3e-25	323 - 382	100	60 / 60	plus

Contig Sequence (382 bp)

>U35_32479 382 Hv_44K_v2
ATCTGTCCATCTCCCCCTGTCGCGTCCCCGTCCCCGTCCCCGTCTCCGTCCGCTCGCATC
ACCTCCCCCTCGTGAGCCGCGCGCCCCGCCGCCAAACCCTAGCCCCGGCGCCGCGCCGAC
GGAGAGCGGGGGGGCGGCGGCACCACCCTGATGCGCAGCCGCCCGCGGGCGCCATGGAGC
TCGTCCCCTTCAAGCCCGCGGCGGGGGCCCTCGTCGAGTGGGGCGGCGCGGGCTCGATCC
CCGCGATGGTGGCGGCGCAGCAGCAGCAGCTGCACGCGCAGGCGGACCAGCTCCAGCGCC
TCGTCGTCGCCCAGTGCCGCCTCACCGGCGTCAACCCTCTCGCGCAGGAGATGGCTGCTG
GTGCATTGTCTATCAAGATAGG

Homology of Contig U35_32479 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None