barSeed - Barley Seed Development Database

Probe CUST_35205_PI390587928

Source Contig U35_9698

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35205_PI390587928	Hv_44K_v2	TGAATGCTGCAAGTATGAGCGTGATGGGATCGTCTGTTGCCATATACTAAGGATCATGGT	1427	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.185	0.158	0.651	1.575	1.458	1.946
Raw	3.444	4.123	25.559	88.616	31.265	44.443

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC23260	938	3e-25	841 - 900	100	60 / 60	plus	ABC23260
Harvest35	U35_9698	1525	3e-25	1428 - 1487	100	60 / 60	plus

Contig Sequence (1525 bp)

>U35_9698 1525 Hv_44K_v2
TAGAGCTGGGTTGAATATCAAGAAGAAAGTAGACACCCAAAACCTGCAACATATTGCCCC
TGAGAGGTGGAGGAATACAAGTGAAAGAACAAACTGCCCAGCCCGTATGTTTTGAAACGG
AGAGATAATGCCTGGGTTGTTACAGAAATAAATGACGACCATAACCACCCTCTCATCAAG
AAGTGGTCGCTGATAGGGTTCCTACGATCACATAGACATATCCCTGAAGAAGAAGAACAG
TTTGTGAAGTTGCTTCACTCGTGCAATCTGGAACCTTTTAGACACATGCAGTTGTTGACA
GAGTTGCATGGCCAACGTGAAGCAATTGGTTACACTCATAAAGACTTGGCAAACTTTTTG
GCAAAGTTTCGGGCCCAGCATAAATACACTGATATGCAAGACACTATTGAGTACTTCAAG
AGCAGTCAACAACTTGATAAAGACTTTTTTTACAAGTACAAGCTTGATGATGATGATAAG
GTCCAATGCATTTACTGGACTGATGGTTCAGCGAGAAGGGCATACAAGTTTTTCAGTGAT
TGTGTTTCTTTTGACACAACCTACTTGACCAATATATACAAGATGCCTTGTGCCCCGTTT
ATTGGTATAAACAACCATGGACAGTCAATTCAGTTTGGTTGTGCTTTCGTTAGGAACGAG
CTATCAACAAGCTTCGTTTGGCTATTTGAGACATTCCTAGAGGTAATGGGTGGTTTGGCT
CCAACCAATATCATAACTGATCAAGATTTTGCCATGAGGTCTGCTATTCAGGATGTTTTT
CCCAATACAACGCACCGAAACTGTCGTTGGCACATAATGCAAAATGCAACTGAGAAGCTT
GGTGCGTTCCTAGCGAAAAAGCCAGAGTTGCAAGCTGAGTTCAATGATTGTGTCAACGAC
AGCTACGCTCTTGAGGAGTTTGAAGCAAGGTGGATTGCAATGGTTCGACAACATGGGGTT
GCAGAACACCCAGACTTTGTTTATTTGTATGAGAAACGAAGGTGTTGGGTGCCTGCCTAC
TTTATGCACAAGTTCTACCCCTTTCTCCAAACCACACAAAGGAGTGAAGGCTTCAATGCT
GTGCTCAAAAAGTATGTCAACCCACAAAACTCAATAATGGACTTTATTCGCCAATATGCT
GCCATACAAGAGAAGATAATGTGTGCTGAGAGCAAGCAGGATGCAGACACAACAATCACA
ACAGCTAGGAAGTGGAGTTACAACCCAATTGAGCTCCAAATGTCAAGTATCTATACACGC
AATATTTTTCTTAGGTTCCAGGTGGAGATGCAATCGTTGTTGTCTTACAGCTGTAAGCAA
ATGGGTGCCCAAGAATACATGGTTGAATGCATTGCTAAGTTTGTCCCGGGATATGGCAAC
AAGTCCTTTAAGGTTCATGCAAATGTTGAAGAAGGGTTTTATATGTGTGAATGCTGCAAG
TATGAGCGTGATGGGATCGTCTGTTGCCATATACTAAGGATCATGGTCCAGCTTGGTGTT
ACCACGTTGCCAGCGGCATACATAC

Homology of Contig U35_9698 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g13740.1	839	2e-152	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi3g10422.1	940	2e-103
Arabidopsis v10	AT4G38180.1	788	7e-87	\| Symbols: FRS5 \| FAR1-related sequence 5 \| chr4:17906702-17909404 REVERSE LENGTH=788