barSeed - Barley Seed Development Database

Probe CUST_35204_PI390587928

Source Contig U35_9699

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35204_PI390587928	Hv_44K_v2	CTTTAACCTGGCAACCCTTCAGAAATAAATTGCTTGTATAACGGAACTACCGCCCAATAA	3747	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.610	2.893	1.449	1.006	0.885	0.751
Raw	14.069	36.718	17.581	21.037	5.149	4.217

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_3258.3	3124	6e-21	2736 - 2788	100	53 / 53	minus
JLOC1	JLOC1_3257.1	5103	6e-21	3296 - 3348	100	53 / 53	plus
Harvest21	ABC19175	3807	3e-25	3748 - 3807	100	60 / 60	plus	ABC19175
Harvest35	U35_9699	3807	3e-25	3748 - 3807	100	60 / 60	plus

Contig Sequence (3807 bp)

>U35_9699 3807 Hv_44K_v2
TGTAGCTATCGGTGCTGGCTGGCTAGTGCCACCGCTACCGATACCCATCCCGGCAGACTA
CTTACAAGAATCAAAGATGAGCCCCGGCACGGCGGCCACGGGCGGTGGCGGTGGCGAGCG
GCGGAGCATCCGGGGCCTGTTCAAGTTCGCGGACCGGGTGGACGTGGTGCTCATGGCCCT
GGGCACGCTGGGCGCCATCGGCGACGGCTGCTCCACCAACCTCCTCCTCATCTTCGCCAG
CGACGTGATGAACTCGCTGGGGCGCGGCCACGCCCAGCAGCAGGGCAGTGCCACCAGCGC
GCACTTCATGCATGACATCGAGAAGTCGTGCCTCAACTTCGTCTACTTGGCGTTCGCCAT
CCTGGTGGTGGCCTCCATGGAGGGATACTGCTGGAGCCGGACGAGCGAGAGGCAGGTGCT
CCGGATCAGGCACCTGTACCTGGAGGCCATCCTGCGGCAGGAGGTGGCCTTCTTCGACTC
GCAGGAGGCCACCACCTCGGAGATCATCAACAGCATCTCCAAGGACGCCTCACTCATCCA
GGAGGTGCTCAGCGAGAAGGTTCCTCTGTTTCTGATGCACTCCACGGTCTTCGTCTCCGG
GCTCGCCTTCTCCACCTATTTCTCCTGGAGGCTGGCTCTGGTTTCCTACCCTCTGGTCCT
GCTCCTCATTATCCCCGGTCTCATCTACGGGAAGTACCTCCTGTACCTCTCCCGCGAGTC
GCGCCGCGAGTACGCCAAGGCAAACTCCCTCGTGGAGCAAGCGCTAGGCTCCATCAAGAC
CGTTTACTCCTTCACTGCAGAGAAAGGGATCATCCAGAGGTACACGGCAATCCTCGACAA
GACCATCAACCTAGGGATCAAGCAGGGCATTGCCAAGGGACTCGCTGTCGGATTCACCGG
TCTTTCTTTCGCCATTTGGGCATTCCTCGCCTGGTATGGCAGCCGGTTGGTGATGTACCA
TCATGAAAGCGGAGGGAGGATATACGCTGCAGGAATCTCCTTTGTTCTGGGTGGCCTATC
CCTTGGAATGGCACTCCCGGAGCTAAAACATTTCATCGAGGCCTCCGTTGCTGCCACGAG
AATTCTCGAACGGATCAACCGTGTGCCCCAGATCAATGATGACGACCCAAAGGGGCTTGT
GTTGGATCAAGTCCGTGGAGAGATTGAGTTTGAGTCCATCCGCTTTGTCTACCCGTCCAG
GCCTAATATGACAGTCCTCAAAGACTTCAACCTCCAGATTCCTGCTGGCCAAACAATTGC
TCTGGTTGGCTCTAGTGGCAGCGGCAAGTCTACCGCAATAGCACTGGTACAGCGCTTCTA
TGATGCCAGTGAAGGAACTGTCAAGGTCGACGGCATCGACATTAAGAAACTTAATCTCAA
GTCGATTAGGAGCAAGATTGGACTTGTCAGCCAAGACCATGCACTGTTCGGCACATCCAT
AAAAGAGAACATCTTATTTGGCAAACCAGATGCAACCATGGATTTACTATATGCAGCAGC
CATGACAGCGAATGCTCACAACTTCATAATGGGGCTTCCTGAGGGATATGAGACTAAGAT
TGGTGAGCGTGGAGCGTTGCTATCGGGTGGCCAGAAACAGCGCATTGCCATTGCAAGGGC
GGTCCTCAAGAACCCTGCTATACTTTTGCTTGATGAAGCCACAAGCGCACTTGACTCAGA
GTCTGAGAAGCTAGTGCAGCATGCACTTGATCAAGCATCTATGGGAAGAACAACACTGGT
CGTAGCTCACAAGCTTTCCACCGTGAAGAATGCTGATCAAATTGCGGTAGTCGATGGGGG
TAGAATAGCTGAAATTGGGACGCATGATGAGCTGATCAACAAGGGTGGCCCATATTCACG
ACTTGTGAAATTGCAGAAGATGGTGAGCTACATAGATCAAGAAACTGACCAATTTAGGGC
CTCCTCAGCAGCAAGGACCAGTGCCAGCCGTCTCAGCATGTCCAGAGCAAGTCCCATGCC
ACTCACGCCAGGTTTCTCAAAGGAAACCGAGTCATATGTTTCCCCACCTGCACCGTCTTT
CTCCAGGCTTCTTGCAATGAATGCACCAGAGTGGAAGCAAGCACTCATAGGCAGCATCTC
TGCATTGGTATATGGTTCCTTGCAGCCCACCTATGCTCTAACCATCGGAGGGATGATTGC
TGCATTCTTTGTTCAGGACCACAATGAGATGAACGCAATCATCAGCCGCTATGCATTGAT
CTTTTGCTCACTGTCCCTGGTATCCATTGCTGTCAATCTACTGCAGCACTACAATTTCGC
CTACATGGGGGAGCATCTAGTTAGGCGTATCCGAGTCCAGGTGCTTGAGAAGATCTTAAC
CTTTGAGGCAGCATGGTTTGATGAAGACACAAATTCAAGTGGCTCGCTGTGCTCTCGGCT
AAGTGACGAGTCTTCTCTTGTCAAAACCCTTGTCGCAGACAGAATCTCCCTGCTACTTCA
AACAGCTTGTGGGATTGTAATTGCGGTGACAATGGGCCTCATAGTAGCATGGAAACTTGC
CCTTGTCATGATTGCTGAACAGCCCTGCACGATGATATGCTACTATGCCAAGAAGATAGT
TCTCTCAAATGTGTCGAGGGACTTGGCAAAGGCTCAGTATGAAAGTACTCAGATTGCCAT
AGAAGCTGTTTATAACCACAGGATGGTGACCTCATTTGGATGCTCATCAAAGATTCTTCA
GCTCTTCGAGCATACGCAAGAGGAACCACTGAGGAAGGCAAGGAAGAAGTCATGGGTAGC
AGGGATAACCACAGGGCTGTCGCCGTGCCTCACATTCTTATCATGGGCATTGGACTTCTG
GTATGGTGGGAAATTGGCACAGTCCGGGGAGATCTCAGCAGGTGATGTCTTCAAAACCTT
CTTCGTCTTGGTGAGCACAGGAAAGCTGATCGCTGATGCTGGCAGCATGACATCTGACCT
GGCAAAGGGAGCAAATGCTGTTGCTTCAGTTTTTGAGGTGCTAGATAGGAAATCTATCTC
TCCGCAAAATTCACAGGTGGAAAAGGACAATCCGAAGAGCAAGATACAAGGACGAATAGA
GTTCAAAAAGGTGGATTTTTCATATCCAACAAGACCACAATGCCTGATCCTGCAAGATTT
TAGCTTGGATGTCAAAGCAGGAACAAGTATTGGCCTGGTGGGGAGAAGTGGATGTGGTAA
ATCCACAATCATAGGTTTGATCCAGAGGTTCTATGATGTTGATAGAGGTGCTGTAAGGAT
CGACGGTGTGGATGTGAGGGAGATGAATGTTCTTTGGTATCGAGGATTCACTGCTTTAGT
TAGTCAGGAGCCTGCAATGTTTTCTGGCAGTGTCAGGGACAACATCGCCTTTGGTAAACC
AGAAGCTGATGAAGAAGAGATTGTCGAAGCTGCTAAAGCCGCAAATGCGCATGAATTCAT
CTCATCTCTGAAGGACGGATATGACACTGATTGTGGAGAGCATGGCATACAGCTATCAGG
AGGACAGAAGCAAAGAATTGCAATTGCGAGGGCAATAATCCGAAATCCAGCTATACTACT
TCTTGATGAAGCAACAAGTGCTCTCGATGCACAGTCCGAGCAAGTGGTGCAGGAAGCACT
TGATCGGATCATGACAGGGAGGACCACAATCATAGTGGCACATCGACTAAACACAATCAA
GAATGCAGACTCAATAGCCTTCTTAGGAGAGGGCAAGGTGATTGAGCGTGGTACTTACCC
ACAGCTCATGAACAAGAAGGGGGCATTCTTTAACCTGGCAACCCTTCAGAAATAAATTGC
TTGTATAACGGAACTACCGCCCAATAA

Homology of Contig U35_9699 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g52550.1	1235	protein\|ABC transporter, ATP-binding protein, putative, expressed
Brachypodium v1_2	Bradi2g48610.1	1234
Arabidopsis v10	AT3G28345.1	1240	ABC transporter family protein \| chr3:10593921-10598775 REVERSE LENGTH=1240