barSeed - Barley Seed Development Database

Probe CUST_35199_PI390587928

Source Contig U35_13956

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35199_PI390587928	Hv_44K_v2	GTAAGCTCGATCTTTGAGCTGTTATCACACTGTTACTATGTTGTATCAATGATTGAATGT	4	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6518.2	970	2e-24	740 - 799	100	60 / 60	plus	ABC00093 ABC00181 ABC00395 ABC00652
MLOC	MLOC_6518.1	997	2e-24	838 - 897	100	60 / 60	plus	ABC00093 ABC00181 ABC00395 ABC00652
JLOC1	JLOC1_4251.1	1164	8e-25	850 - 909	100	60 / 60	plus
Harvest21	ABC00652	1151	3e-25	77 - 136	100	60 / 60	minus	ABC00652
Harvest21	ABC00093	1058	3e-25	773 - 832	100	60 / 60	plus	ABC00093
Harvest35	U35_38610	646	3e-25	238 - 297	100	60 / 60	minus
Harvest35	U35_13956	1042	3e-25	5 - 64	100	60 / 60	minus
Harvest35	U35_13908	1058	3e-25	773 - 832	100	60 / 60	plus

Contig Sequence (1042 bp)

>U35_13956 1042 Hv_44K_v2
GTGTACATTCAATCATTGATACAACATAGTAACAGTGTGATAACAGCTCAAAGATCGAGC
TTACAAAGACATGTCAACACCCTGGCAGCATTTTAACATGCCTACATATTCCAGTCATTT
GTCCAGACGCTAGTTGCTTCTGCCTTCAGGACTTGCTGGCTATATTGTTGGAGAGCCAGT
CCAGCCCTTCATACAGACCCTCTCCACTTGTGGCGCAAGCACTCTGGATATACCAGTGTC
GCTGACGCAGAGAGTGTAGACCAAGCTTATCTGTTATTTCAGCAGCATTCATGGCATTGG
GAAGATCTTGCTTGTTAGCAAAAACAAGCAATACAGCATTGCGCAGCTCGTCCTCATTCA
GCATCCTGTGGAGCTCATCTCTTGCCTCAGCAATACGGTCTCTGTCGTTGCTGTCAACAA
CAAAGATAAGGCCCTGAGTGTTCTGGAAGTAGTGCCTCCACAAAGGCCTTATCTTGTCCT
GGCCCCCGACATCCCGCTTGAATTCAAGCCACCCTCTCCCACGAACCCTAGCCAAGCTCT
TCATATCGGCGGCGGCGGCGGCGGCGGCGGCAGCGAAGAAGAAGAAGAAGAAAGATGATC
TACGACGTGAACTCCCCCCTGTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCGTCCTCC
GACAAGAGGAAAATGGAAGAGCAGAAGCCGAAGGACCAGAGGTTCAAGGCCAACGAGAAC
AAGCCTGTAATGAACGAATGACCATCCTTCGGACAGTCCAGTGCCTGCAAGGCCTAGCTG
CCAATCATGTGACTCCTATGTTAAAATGGGTGGTGTGAACATTTGCTTGGTCGTTCTGAA
AACTATCCAAGTATCCAGTACTGTGTTTTGAGTTCCTATATCTGCACTGCATGCCTGGAA
TGATAAATCAGTAGATTTTATCCTGTGATGTGTTCTCGTGGTTTTGGAATCCACTTCTAT
ATGGTGATTCGTGTAGCATCTTCTATGCTGTCTATACTATTTCTCACGTTTCTTCCTTTG
TGAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_13956 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59790.3	182	2e-73	protein\|ADP-ribosylation factor, putative, expressed
Brachypodium v1_2	Bradi4g43910.1	182	8e-76
Arabidopsis v10	AT2G47170.1	181	2e-74	\| Symbols: ARF1A1C \| Ras-related small GTP-binding family protein \| chr2:19367264-19368518 FORWARD LENGTH=181