barSeed - Barley Seed Development Database

Probe CUST_35197_PI390587928

Source Contig U35_13958

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35197_PI390587928	Hv_44K_v2	TAAAAATCTAGTGAACGAGCCCAAGAAGAAGAAGCGGGATGATCCCATGGTGGAAGTGAT	640	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354022	1281	2e-24	601 - 660	100	60 / 60	plus	ABC00027 ABC00104 ABC00652 ABC00847 ABC29140
MLOC	MLOC_32324.1	405	2e-24	226 - 285	100	60 / 60	minus	ABC00847
MLOC	AK353908	1209	7e-23	724 - 783	98	59 / 60	plus	ABC00027 ABC00104 ABC00652 ABC00847 ABC29140
MLOC	MLOC_57522.2	320	3e-21	181 - 240	97	58 / 60	plus	ABC00847
MLOC	MLOC_57522.3	417	3e-21	278 - 337	97	58 / 60	plus	ABC00847
MLOC	MLOC_57522.1	416	3e-21	277 - 336	97	58 / 60	plus	ABC00847
MLOC	MLOC_32070.1	147	3e-21	49 - 108	97	58 / 60	minus	ABC00847
JLOC1	JLOC1_21102.1	399	8e-25	217 - 276	100	60 / 60	minus
Harvest21	ABC00847	1298	3e-25	641 - 700	100	60 / 60	plus	ABC00847
Harvest35	U35_13958	1298	3e-25	641 - 700	100	60 / 60	plus

Contig Sequence (1298 bp)

>U35_13958 1298 Hv_44K_v2
GCCTCCCGACCCCTCGACACCCCACCGCCCGACCCCTCGACGCAGGCGAACTCCTCCGGC
GACCCCAACTGGATTTTTCCCCGGTCCCTGCCGCTCGGGTTCTTGTTGGGGTGGATGAGT
TGCCTCCATCTTGGGATCCAGTTGTGATGCCTAACTTCGATACTCCTTGGCCTCTTATGA
TTTTCTATCATGTCTCTATGAAAAACTTGCTTGCATGCTTATTCTAATTTTAGTGTCGAG
ATGAATTCCGAGATAATCTCACTCACAACGTAATAAGTTTACTCATGTATGATACAGTTT
TCTCTTATATACAGTCCTGGCCAGACATAAGCAAGTTTCAAACAAAGCCATTTCCTTTGT
ATGACAAGCTAGGTGATCTTTATGATGGACATATAGCAGAAGGTAATTACAATTTTACAT
CAATTCAGGCTACACAAGTGATTGATGATGATCCTGAAGTTGAAAGAGATGAGACTGGGT
TCTCTTTTGATCTGAATCAGTGCGAAGATGATTTACTCATGTATGATGATCCAAGAGATG
CGGCTCAAAGTGATGATCCAAGTGGAGCTATTCAAAGTGATGATCCAATAGATGGTACTC
AAAGTGATGTTACTCGAGCAGGTGCTCCTGGTGGTTCCAATAAAAATCTAGTGAACGAGC
CCAAGAAGAAGAAGCGGGATGATCCCATGGTGGAAGTGATGGCAAACTATGTGGAGATCA
AACGGAAGCAAGCAGAGGACGAGTCTGCTTTGTTCGCAGAGTCAAAAAATGCCCAACAGT
ACTGCCTCAATGCCGCCGCCGAAGATGAAGTGAGCGTCGTCGTGTTCCTTCGGAGCGAAA
TGGCAGACTTACCTCGGGGTGTCTAAGAAAAATGGAAGAGCACAAGCCGAAGAACTAGAG
GTTCAAGGCCAACGAGAACAAGCCTGTAATGAACGAATGACCATCCTCCGGACAGTCCGA
TGCTTGCAAGGCTTAGCTGCCAATCATGTGACTCCTGTGTTAAAATGGATGGTGTGAACA
TTTGTTTGGCCGTTCTGAAAACTATCCAACTATCCAGTATCTGTGTTTTGAGTTCCTATA
TCTGCACTGCATGCCTGGAATGATAAATCAGTAGATTTTATCGTGTGATGTGTTCTCGTG
GACCATTCGTGGTTTTGGAATCCACTTCTATATGGTGATTCGTGTAGCATCTTCTTTGCT
GTCGATACTATTTCTCACGTTTCTTCTTTTATGAACAAACCTTTGTTCTAAGTACAATTC
TTCCGTAATTTTTTGAAGGTGTAAAAATTACATTTTTA

Homology of Contig U35_13958 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None