barSeed - Barley Seed Development Database

Probe CUST_35194_PI390587928

Source Contig U35_25932

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35194_PI390587928	Hv_44K_v2	GATTTGATTTACAACAGTGTAATAATCCTTCCCAATGCATGTATGGCACGCTCATGCTCT	539	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.531	8.489	0.882	0.532	0.942	0.839
Raw	69.905	100.642	8.820	6.724	3.254	3.098

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64157.1	1037	2e-24	11 - 70	100	60 / 60	minus	ABC24634
JLOC1	JLOC1_42089.1	1665	8e-25	1455 - 1514	100	60 / 60	plus
Harvest21	ABC24634	633	3e-25	540 - 599	100	60 / 60	plus	ABC24634
Harvest35	U35_25932	633	3e-25	540 - 599	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_25932 633 Hv_44K_v2
GAGAAAGGAGCAAATGTTACACGATGCAAACATGACCCTGAAAAGAAAGCTGGGCGAGAT
CCAGGTGGAGGCGACACCTGATCCACCGCAGCAGCAGCAGCTGCAGGTGTGGCAGGGCGA
CAGGGGCCTGCCGTCCCACACGCCTCCGCAGCCAGAGCACTTCTTCCAGGCCCTAGAATG
CTATCCTTCTCTGCAGCCAGTATTTCGTGGCATGGATGTGAACCAGCCGCCGCCTGCATG
GATGGCATAGCTATGGACCCGCGTTGATCTGTCTACTGTTTCAGCCGATCAACAAGATGC
ACCACTTGGCATGAGCGATTATCTATCTCAAAAACAATCAACAACAAGATGCGTTGCCTG
CCTAGTGTCCTGCATCTCCAATAGCCTCATATATATATCAACTCGGCTGCTTTTGTGTTC
CCTTTTCAAGTGCTTGCCGGACTTCTTTAAGTAATGTGTACAGGGCTTGTCTTATTTGTC
ATTAGCAAGTGTTATATTCCTCATTTTCCTTAGAAAAGGCGAGAACGGTTTCCTTTTGGG
ATTTGATTTACAACAGTGTAATAATCCTTCCCAATGCATGTATGGCACGCTCATGCTCTC
TCAAAAAAAAAAAAANAAAAAAAAAAAAAAAAA

Homology of Contig U35_25932 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None