- Probe CUST_35177_PI390587928
- Source Contig U35_13965
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35177_PI390587928 | Hv_44K_v2 | GGTGATCAGGTGCTTACTCTCTTTTCTTCCTATGAATGAGACCATTTATTTGATTCAAAA | 548 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.360 | 2.325 | 1.253 | 0.707 | 0.246 | 0.259 |
| Raw | 21543.600 | 33693.577 | 15439.433 | 13855.580 | 1684.937 | 1959.950 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK248298.1 | 516 | 3e-22 | 461 - 516 | 100 | 56 / 56 | plus | ABC00716 ABC39327 |
| MLOC | MLOC_38581.2 | 1175 | 3e-22 | 205 - 260 | 100 | 56 / 56 | plus | ABC00716 |
| Harvest21 | ABC00716 | 606 | 3e-25 | 534 - 593 | 100 | 60 / 60 | plus | ABC00716 |
| Harvest35 | U35_13965 | 622 | 3e-25 | 549 - 608 | 100 | 60 / 60 | plus |
Contig Sequence (622 bp)
>U35_13965 622 Hv_44K_v2 CACCTCCCAAGCATCGCCGCCACTCTCCGCCTCTCGCTCATCCGCGTGCAGCATCTCTCT AGCTCCCCCCTAGAGAGATCTCACAGCAGAGTCAGCAGCAGCAAGCAAGGTCACATCCCA GCACCACCAGGAGCCAACCCGCGTCGCCAATGGCCGGTCTCAGGATGAAGCTCGTCGCCG TCGCCGCCATGGCCGCCGCGCTCGTCGCCTCAGCGGCCGCCGCCGAGGCCCCGGCCCCGG CTCCCGCCTCCGACGCCGCCGCCGCCGTGCCCCTCGCCGCGGCCTCCTTCGCCGCCGCCG CCTTCGGCTACCTCTTCTGCTAGATCCGTCGCCGCGGCGGCGCGTGATGAGATGAGATGA GATGGCCCTTCTTCTTCGTCTCTCCGGCTTGGTTTGCTCGTCGACGTCGTCTCGCTGTGC GCTGTGTTCGTTCCGTCGTGTTGGGGGTGTGAGGTGTGGGCGCGTGCGTGTGTGTATGTA TGGGCCGCGGTGGTGTGGGAGGTGTCCTAGTACGTACGTACGTGCGCCGGCGTTCCATTC TTTGTGTTGGTGATCAGGTGCTTACTCTCTTTTCTTCCTATGAATGAGACCATTTATTTG ATTCAAAAAAAAAAAAAAAAAA
Homology of Contig U35_13965 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |