barSeed - Barley Seed Development Database

Probe CUST_35170_PI390587928

Source Contig U35_25945

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35170_PI390587928	Hv_44K_v2	ATTCATAACATTCATCTCCATCCTTATAATCTTAACAGCAATCGCTCACATGACAGTCCT	546	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.960	2.190	3.970	2.313	0.511	0.364
Raw	165.179	614.631	914.928	857.975	67.305	49.955

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64106.3	2243	2e-24	556 - 615	100	60 / 60	minus	ABC04949
MLOC	MLOC_64106.2	2393	2e-24	660 - 719	100	60 / 60	minus	ABC04949
MLOC	MLOC_64106.1	2445	2e-24	784 - 843	100	60 / 60	minus	ABC04949
JLOC1	JLOC1_42049.1	2638	8e-25	1638 - 1697	100	60 / 60	plus
Harvest21	ABC23656	689	3e-25	547 - 606	100	60 / 60	plus
Harvest35	U35_25945	689	3e-25	547 - 606	100	60 / 60	plus

Contig Sequence (689 bp)

>U35_25945 689 Hv_44K_v2
GCGACTGTATTCTCGCAGCCATTTCGTGAAGGGTATTGAGCTGATGATTCTGCTTGTCGT
GTATGAAATTTTCGGACAGACGTACAGAGGAGCTATCACTTACATCTTCATCACTGTTTC
CATGTGGTTTATGGTGGGCACCTGGCTCTTTGCTCCCTTCCTGTTCAATCCTTCTGGATT
TGAGTGGCAGAAGATTGTAGACGACTGGACTGATTGGAACAAGTGGATCAGTAACCGTGG
AGGTATTGGTGTGGCGCCAGAGAAAAGCTGGGAATCGTGGTGGGACAAAGAGCAGGGACC
TCTTCGGCACTCTGGGAAGCGTGGCACCATTCTTGAAATACTTCTAGCATTGCGTTTCTT
CATCTACCAGTACGGGCTTGTGTATCATTTGAATATAACCAAGCAGTATAACCAAAGCGT
GCTGGTTTACGGCTTCTCATGGGTTGTGATTCTGGTCATGCTGCTTGTTATGAAGACCGT
GTCAGTCGGCAGGAGGAGGTTCAGCGCGGAGTTCCAGCTCGTCTTCCGGCTGATCAAGGG
GCTTATATTCATAACATTCATCTCCATCCTTATAATCTTAACAGCAATCGCTCACATGAC
AGTCCTCGACATCTTTGTCTGCATCCTCGCTTTCATGCCGACTGGATGGGGCCTGCTTCT
GATTGCCCAAGCGATCAAGCCCGTCGTCG

Homology of Contig U35_25945 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g51270.1	1846	3e-129	protein\|1,3-beta-glucan synthase component domain containing protein, expressed
Brachypodium v1_2	Bradi1g29622.1	1966	1e-135
Arabidopsis v10	AT5G13000.1	1955	4e-112	\| Symbols: ATGSL12, gsl12 \| glucan synthase-like 12 \| chr5:4110445-4121202 REVERSE LENGTH=1955