barSeed - Barley Seed Development Database

Probe CUST_35167_PI390587928

Source Contig U35_25948

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35167_PI390587928	Hv_44K_v2	AAATCAATTTGTGTTGCTATGTGATATCAGAGTTAGTTTGACAGCGGTCAGTTTAACCGC	657	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369350	4698	3e-21	4288 - 4347	97	59 / 61	plus	ABC24810
Harvest21	ABC24810	717	3e-25	1 - 60	100	60 / 60	minus	ABC24810
Harvest35	U35_25948	717	3e-25	658 - 717	100	60 / 60	plus

Contig Sequence (717 bp)

>U35_25948 717 Hv_44K_v2
GTACAGTGATGATAGTGGCGTTCTACTAAGCATACCGGAATTTTAGCAATCAACTGTAAT
GGGGATACCAGAGCTTGCCCAGACTAGTCTGGAACGAAGTTCCAAATTTTGCATGGTCGA
TAATAACGACTCTACAAATCTGCGCTCAACCAAGCTTTGAAGAGCACTGCTGAGCAGTTA
AGTTTGGGTGATGATGATATATTTACATAAATCAAGTGCCCTCTTTGGACTTTGCTACAA
ATACTGAGGCTGCAGATGTACAGGGAAATCAGACAAGCAACAGTCCAGGCAACGATGAAG
GAAATCAAATTCTACCAGAAGGAATGCATGCTGTTGGCAGGGGGACATCACCATCATGGG
AAAATGTTGTGCAGTCCGATTTAGGTTTGCCAGCTTCGTCTACATACCAGTTTGGTGCCC
AGTATCAGCAAAGTTCTGAATATCAGCCACCAGGAGGCCTAGACAGCAGTAATTTGCAGC
TGCAAATTTCTGCTTCTAAAAGATTTCTTCTGGTATCAGAAGACTGTGTCGACTCACCAT
CTTATGACTTTATACCAAGAGATGAAGTAGTCAATGGCATTAATACTCTTTCAGCTCATG
ACATTAGTCTTCAAAGCTGTCTGAACCCGGATTGGCAAAGAGCACCTGTAACACTTCAAA
TCAATTTGTGTTGCTATGTGATATCAGAGTTAGTTTGACAGCGGTCAGTTTAACCGC

Homology of Contig U35_25948 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g31900.1	1004	3e-52	protein\|calmodulin-binding transcription activator 4, putative, expressed
Brachypodium v1_2	Bradi5g08167.1	1023	5e-57
Arabidopsis v10	None