- Probe CUST_35162_PI390587928
- Source Contig U35_37929
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35162_PI390587928 | Hv_44K_v2 | AAAGATTGCTGTGCATCATCTCTGAAAGTCTGAACTTGCCACCCTCCTATCTGCAAGAAG | 57 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.179 | 1.177 | 1.614 | 3.858 | 0.729 | 0.727 |
| Raw | 12.577 | 18.697 | 22.720 | 82.583 | 4.951 | 4.806 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358188 | 1150 | 2e-24 | 546 - 605 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_19842.1 | 653 | 2e-24 | 545 - 604 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_13754.1 | 431 | 8e-25 | 325 - 384 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC33692 | 145 | 3e-25 | 58 - 117 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37929 | 145 | 3e-25 | 58 - 117 | 100 | 60 / 60 | plus |
Contig Sequence (145 bp)
>U35_37929 145 Hv_44K_v2 TCCCAGGATACAGGGACACTGTTGTAAAATACAGCGACAGCATGAAAGTCCTCGCCCAAA GATTGCTGTGCATCATCTCTGAAAGTCTGAACTTGCCACCCTCCTATCTGCAAGAAGCGG TGGGAGAAGCTTACCAGAACATCAC
Homology of Contig U35_37929 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |