barSeed - Barley Seed Development Database

Probe CUST_35159_PI390587928

Source Contig U35_49900

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35159_PI390587928	Hv_44K_v2	TCAATATCTCAGTACTAAGTAAGTACCTTGCTTTGAATTTTCTGCAGTGATCCATGAACC	260	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_46031.1	462	7e-23	77 - 136	98	59 / 60	plus	ABC04805
JLOC1	JLOC1_29839.1	431	4e-23	45 - 104	98	59 / 60	plus
Harvest21	ABC51860	676	3e-25	261 - 320	100	60 / 60	plus
Harvest35	U35_49900	676	3e-25	261 - 320	100	60 / 60	plus

Contig Sequence (676 bp)

>U35_49900 676 Hv_44K_v2
TTATGCTGCTACAGGAATAGAAATTAACTGGCTTGTGAATATTTGATCGTGTTTTATTTT
GATTGGAACAGTGGATAAGTAGCAGTTTACAGGTTTTGTTATCAAGAGGTGGACTTGCTT
TCTGTTTCATCATTCTAATGCCACCTTTGCTTCCCGTTAAAACCCTTGTATTAAGTAGAC
AAAACTTGGAACTTGACCAGTAGTTTAACCTCTACATCTTGAAATTGCTCTGTTTATCTT
TTTGTGATTTGCTTTTTATATCAATATCTCAGTACTAAGTAAGTACCTTGCTTTGAATTT
TCTGCAGTGATCCATGAACCAAATGGTCCGCAGGAATACTCACAATATGAGCATTCATCC
ATCCCTGCGACAGTGAAAAAGCTATTTAATTTACGTGCTAACTACCTCACAAAGAGGGAT
GCATGGGCTGGGACGTTTGAGGACTACCTCAAAGTTCGAAAGACACCAAGAACTGATTGT
CCAGAGAAACTCCCAGAGGTTACAAAGTCTCTGCGACCATTCGGTGCTAATGAAGATAAA
TCTCTTTCCGAGTTTCAAGTGGAGTTGATTCAACTTGCCTCTCAGCTCAATGGTGACCAT
GTCCTCAACAGCTATCCGGATATTGGCAAGACAATGAGTGTAGGGGAAGCAAATCGCTAT
GCAGAGGATGCTGTCT

Homology of Contig U35_49900 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g61130.1	546	2e-71	protein\|phosphoesterase family protein, putative, expressed
Brachypodium v1_2	Bradi1g03250.2	542	2e-69
Arabidopsis v10	AT1G07230.1	533	6e-61	\| Symbols: NPC1 \| non-specific phospholipase C1 \| chr1:2220509-2222778 REVERSE LENGTH=533