barSeed - Barley Seed Development Database

Probe CUST_35155_PI390587928

Source Contig U35_13974

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35155_PI390587928	Hv_44K_v2	GACTGTCGTCTTGGAAGAAATTTGTGCTCTGGGCAGTGTTTTTAGATCTGAAGTAAAAAA	637	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14264.1	469	3e-22	214 - 269	100	56 / 56	minus	ABC01123 ABC37479
JLOC1	JLOC1_9733.1	470	1e-22	215 - 270	100	56 / 56	minus
Harvest21	ABC37479	573	5e-23	211 - 266	100	56 / 56	minus	ABC37479
Harvest21	ABC01123	766	5e-23	638 - 693	100	56 / 56	plus	ABC01123
Harvest35	U35_13974	764	3e-25	638 - 697	100	60 / 60	plus
Harvest35	U35_42086	573	5e-23	211 - 266	100	56 / 56	minus

Contig Sequence (764 bp)

>U35_13974 764 Hv_44K_v2
GCAATTCCCCACCTTCCAGCGAAACCCGCACCTCACCGCACCTCTCACCGGCGGCAGCAG
CAGCAGCAGCGTCCATGGCGCCCAAGGCGGAGAAGAAGCCGTCGGCGAAGAGGCCCGCGG
AGGAGGAGCCGGCGGCCGAGAAGGCAGAGAAGTCCCCGGCCGGGAAGAAGCCCAAGGCGG
AGAAGCGGCTGCCGGCGGGCAAGAAGACCGCCTCCGGCAAGGAGGGCGGCGAGAAGAAGC
AGGGCAAGAAGAAGTCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGC
TGAAGCAGGTGCACCCCGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCT
TCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGCCGCCAAGCTCGCCCGCTACAACA
AGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCG
AGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAATTCACCTCCTCCT
AGGCTCTCTCCCCTTCTTCTGTGATGTGACGAGCCCCCCTCTTCTATGCCTCCCGGTGGT
GTGTGATGAATCGGCTGTAGTTAGATTATTATGTTCCGACTGTCGTCTTGGAAGAAATTT
GTGCTCTGGGCAGTGTTTTTAGATCTGAAGTAAAAAAATTCAAAACCCGAAATTTCTGAA
GAAATGCTAAATGTCGATGCTTCAGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13974 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g06010.1	156	1e-53	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g00510.2	126	5e-56
Arabidopsis v10	AT5G22880.1	145	9e-52	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145