barSeed - Barley Seed Development Database

Probe CUST_35151_PI390587928

Source Contig U35_13977

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35151_PI390587928	Hv_44K_v2	CTTTTTAGGGCAGAATAATTGGGATGCGTGTCTCTGGTACTCGTTGTATTTCATGGGAAA	365	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.946	1.096	1.176	1.312	0.717	0.887
Raw	237.629	414.781	408.074	705.254	136.693	183.080

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358267	2147	7e-23	2035 - 2094	98	59 / 60	plus	ABC31708
MLOC	MLOC_52016.1	2265	7e-23	2172 - 2231	98	59 / 60	plus	ABC31708
MLOC	MLOC_52016.2	2471	7e-23	2380 - 2439	98	59 / 60	plus	ABC31708
JLOC1	JLOC1_33270.3	2105	4e-23	1945 - 2004	98	59 / 60	plus
JLOC1	JLOC1_33270.2	1811	4e-23	1651 - 1710	98	59 / 60	plus
JLOC1	JLOC1_33270.1	1997	4e-23	1837 - 1896	98	59 / 60	plus
Harvest35	U35_13977	987	3e-25	366 - 425	100	60 / 60	minus

Contig Sequence (987 bp)

>U35_13977 987 Hv_44K_v2
TGAAAAAATATGCATTCCATCATCCAACAGTTTACACTAAACCGGACGCACTTGCAGCCC
ATGATGCCTTGGCTACAGCAGCAGCATCTTCAGTGGATGCTTACATATATGTACAGTGTT
AAGTAATCCATATTTCGATGCACACATAATCTGAGACGTCTTCCTGGTTTGGGAATTCAG
CAAACTGGGACACTGAAATAAACGGATCATCTCCCGGAACCAGCACTACGTGCAGCTCCC
CATGACTGCGATCTCGTCTTTGAGGGACTTCCTCTTGCCCTCGTTCTTGCTCCTGGGTTT
TGCAGCCTGTTTCAGAGTCTTCTTGAGGTGTAGGTCCGTGAGCGGCCGCTCAGAAGATGA
GTTTTTTTCCCATGAAATACAACGAGTACCAGAGACACGCATCCCAATTATTCTGCCCTA
AAAAGCATCACAAATATTCACAGAGCATACATGTTTCTCAAACAACCCAACATACAAACG
AACTACACAGAGAGATTGGTAAACTTATTCATGCAAGAAAAACACTAGTGGTCCAAAGGC
TCATAGGAGCTGTACACAGTTAAATCCTCTGACCCGATGGTTAATCCTTACTGCTGCCTG
GTCTGCCGAAATCAGAGGTGCCAAAACCATTAGAGCTTCTGCCATACCGTGAAGGGTCTG
AATCATCGGATCTCCTGGTGAAACGAAAGTTTTTTTTTTTTTTTTTTTTAATCTTCAAAT
GCACACATTTGATAAACGAAACAGTTGACCAAGTAGAAAATTTCAAATGAGGGTAGCAGA
ACTGCATGCATAACAAAGGTTTACCAACCAGGTTGTACTAACAGAGTTACCAAACTACTT
AAAGACAAGAGGAGGACAGAGGTATCCCAAAACTGAAGGCGCACAAAAGCTCTGATCTCT
CTTAGTATTTGATCGGGGCCAGGATCTCCAGCTGAGTTCCCAACTTCTCCTCGGCTGCCT
TCTCGGCCTTGACGCGGAGCTTCGCCA

Homology of Contig U35_13977 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None