barSeed - Barley Seed Development Database

Probe CUST_3514_PI390587928

Source Contig U35_44452

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3514_PI390587928	Hv_44K_v2	TCAAACCATCTATTATCTCAAGAGCGCTCTGCACGCCGGTGGCGCAACCAGCAGACGAAG	113	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11345.4	1941	2e-24	297 - 356	100	60 / 60	plus	ABC08201
MLOC	MLOC_11345.3	908	2e-24	329 - 388	100	60 / 60	plus	ABC08201
MLOC	MLOC_11345.1	1558	2e-24	281 - 340	100	60 / 60	plus	ABC08201
MLOC	MLOC_11345.2	1366	2e-24	444 - 503	100	60 / 60	plus	ABC08201
JLOC1	JLOC1_7509.3	4914	8e-25	359 - 418	100	60 / 60	plus
JLOC1	JLOC1_7509.2	3809	8e-25	359 - 418	100	60 / 60	plus
JLOC1	JLOC1_7509.1	3380	8e-25	440 - 499	100	60 / 60	plus
Harvest21	ABC42180	407	3e-25	114 - 173	100	60 / 60	plus
Harvest35	U35_44452	407	3e-25	114 - 173	100	60 / 60	plus

Contig Sequence (407 bp)

>U35_44452 407 Hv_44K_v2
CACCACCACCACCACCCAAGAGGGAGAGGCATCCACTCCCTGCCGTGCCAATTCCCAGCC
GCATCGCTATCTATCTATCTATCTACCTCCACAGCAAGCATCCCTCGGCCGGATCAAACC
ATCTATTATCTCAAGAGCGCTCTGCACGCCGGTGGCGCAACCAGCAGACGAAGGGAGAGG
TGTTCAGTCGGTCAGGTAGATGTTGGGGGGCGGGAAGATGAAGGGGGACGCGGGGGGCGG
CGGCGGGAGCAGCAGCATTAGCCCGATGGTGTCCTTCGTGCTGGGCGCCGCCATGGCCAC
CGTCTGCGTCCTCTTCTTCATGTCCGCCAGCCCCGGCCGAAGCCTCGACGACGTCGTCGC
TTGGAGCCACAACAACGGCACCGCCGTCCAGCACCACCACCTGCGCT

Homology of Contig U35_44452 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None