barSeed - Barley Seed Development Database

Probe CUST_35149_PI390587928

Source Contig U35_13979

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35149_PI390587928	Hv_44K_v2	CTTGCGACACAATGTTTCTGGATCTGGAGGAAATAGTTATGGTGTCGCTTTGATCTGTTT	592	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76747.1	1299	2e-24	712 - 771	100	60 / 60	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
JLOC1	JLOC1_51182.1	992	8e-25	629 - 688	100	60 / 60	plus
Harvest21	ABC41297	442	3e-25	24 - 83	100	60 / 60	minus
Harvest21	ABC01132	669	3e-25	593 - 652	100	60 / 60	plus	ABC01132
Harvest35	U35_13979	673	3e-25	593 - 652	100	60 / 60	plus

Contig Sequence (673 bp)

>U35_13979 673 Hv_44K_v2
GCGCACCTCCCAGCGAAACACCACCACACCTCTCTTCGTAGCGGCAGCAGCAGCAACCAG
CGGCATCCATGGCCCCCAAGGCGGAGAAGAAGCCGGTGGCGGAGAAGGCCGAGAAGACCA
CGGCCGGGAAGAAGACCAAGGCCGAGAAGAGGCCGCCGGCGTCCAAGGAGGGCGGCGAGA
AGAAGGGAAAAAAGAAGTCCAAGAAGAGCGTCGAGACTTACAAGATCTACATCTTCAAGG
TGCTGAAGCAGGTGCACCCGGACATCGGCATCTCCTCGAAGGCCATGTCCATCATGAACT
CCTTCATCAACGACATCTTCGAGAAGCTGGCCGGCGAGTCGGCCAAGCTCGCGCGGTACA
ACAAGAAGCCCACCATCACGTCCAGGGAGATCCAGACTTCCGTCCGCCTCGTCCTCCCGG
GCGAGCTTGCCAAGCACGCCGTCTCCGAGGGGACCAAGGCCGTCACCAAGTTCACCTCCG
CTTAGGCTAGCCTGCTCTTGCGTGTTCTTTGAATCTGTCGACTTCTAGTCGCTGTTTTAA
GAATCTGTTGTCCGCTGTAGTTAGATGTTCAGAGGGCACCCTCTTTTAATTTCTTGCGAC
ACAATGTTTCTGGATCTGGAGGAAATAGTTATGGTGTCGCTTTGATCTGTTTAAAAAAAA
AAAAAAAAAAAAA

Homology of Contig U35_13979 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05900.1	154	1e-53	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g00510.2	126	2e-54
Arabidopsis v10	AT5G22880.1	145	1e-52	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145