barSeed - Barley Seed Development Database

Probe CUST_35142_PI390587928

Source Contig U35_25957

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35142_PI390587928	Hv_44K_v2	TTACTATTAGTAGTGTAGCCAGTTTCAGTTAAGGTACGTACGTACAATGGCGTCGACGGC	27	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68505.1	351	2e-24	31 - 90	100	60 / 60	plus	None
MLOC	AK357851	1104	7e-23	157 - 216	98	59 / 60	plus	ABC12340
MLOC	AK362962	922	7e-23	42 - 101	98	59 / 60	plus	ABC12340
MLOC	AK368357	1053	7e-23	41 - 100	98	59 / 60	plus	ABC12340
JLOC1	JLOC1_45329.2	1455	8e-25	89 - 148	100	60 / 60	plus
JLOC1	JLOC1_45329.1	1512	8e-25	89 - 148	100	60 / 60	plus
Harvest21	ABC24159	354	3e-25	28 - 87	100	60 / 60	plus
Harvest35	U35_25957	355	3e-25	28 - 87	100	60 / 60	plus

Contig Sequence (355 bp)

>U35_25957 355 Hv_44K_v2
CAGTCGTCGGCTCTGTCTGTACGCCTGTTACTATTAGTAGTGTAGCCAGTTTCAGTTAAG
GTACGTACGTACAATGGCGTCGACGGCCGTGGCGGACGCGAATGCCGGGGGGTTCGGGGT
CGGGGCCGCCGGAGTGGGGCAGGTCCTCGACGGCTCGAACCCGGCCATCGTCCGTCTCCG
GCAGCTCGTCGACGGCCCCCAGTCTTCAGAGGGGTGGAGGCGGTGCTGGGAGCATGGCGT
GACGCCGTGGGACCTGGGCGAGCCCACGCCGGCCGTCGTCAAGCTGGTGCAGTCCGGCAC
CCTCCCCGGCGGCGGCGCCACCGTCCTCGTCCCCGGGTGCGGCGGGGGGTACGAC

Homology of Contig U35_25957 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None