barSeed - Barley Seed Development Database

Probe CUST_35141_PI390587928

Source Contig U35_25958

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35141_PI390587928	Hv_44K_v2	GGCACGTATGGATCAATTTTATGTGCAGAAAGATCATGTCTATTTGCAAGCACATTTTGT	598	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.938	1.574	1.072	0.789	0.329	0.395
Raw	524.282	661.025	398.251	464.759	66.603	88.216

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372720	1893	2e-24	1802 - 1861	100	60 / 60	plus	ABC38835
MLOC	MLOC_742.2	2228	2e-24	832 - 891	100	60 / 60	plus	ABC15420 ABC38835
JLOC1	JLOC1_447.2	2310	8e-25	915 - 974	100	60 / 60	plus
JLOC1	JLOC1_447.1	2307	8e-25	912 - 971	100	60 / 60	plus
Harvest21	ABC38835	644	3e-25	37 - 96	100	60 / 60	minus	ABC38835
Harvest35	U35_25958	686	3e-25	599 - 658	100	60 / 60	plus

Contig Sequence (686 bp)

>U35_25958 686 Hv_44K_v2
GATGCGAAGTACTTGGCATNGTCATCGCGAGATGGTTACTGCACTATTATTGAGTTTGAG
AATGAGGAACTAGGGCAGCCGCATGCCCTCTCAGGGAAAAAGGAAGTTACAAAGGGAAAT
GTCACATGCAGAAATACTAAGCCAGCAACAGTAGATAGCATGGAAGTTGATGCCGGTACC
GCCAAAATTAAGAAGTCAGGCTGCCCCGAGGGTACAGTGACACCTCCACCAGTGTTGGCC
AAAAACAGCACACTGAGAATGAAGGAAGAGGAAAATGTGGCCTGCGAACATGCAAAGCCA
AAGCCAGACAGTATGGACGTTGATGTTGATGCCACTAAAGCTAAGACAGAAGCCAATCCT
ATGTCTGTAGAAGTGACACCGCCACCAGTGTCAGCCCAGAAGAGTGTATCCAGTAAGCCT
ACTAAGAAGCGAATTACCCCTATTGCAATTAACTAAGTAGCAGAAGTAGTTAGAATCATG
ATATCTGTTGTATTGACAACAAGTACTGGAAACTACAATTAGGTTACTCTGTAAAGAAAT
GTAGCCTGCTGCTGTTTTCGCCTTCTGCTGTAGTCCCAGAAATCCACTTTCTGCTCATGG
CACGTATGGATCAATTTTATGTGCAGAAAGATCATGTCTATTTGCAAGCACATTTTGTTG
AGAAGTAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_25958 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g13280.1	504	7e-68
Arabidopsis v10	None