barSeed - Barley Seed Development Database

Probe CUST_35136_PI390587928

Source Contig U35_13980

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35136_PI390587928	Hv_44K_v2	GCTTGTTGGTCTGAAGAAATATTCATATTCTTACCGCTTGAAGAAATATTGCGTGTCAAA	529	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_40480.1	634	2e-23	300 - 357	100	58 / 58	minus	ABC01121 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01151 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC30555 ABC31601 ABC37479 ABC49951
JLOC1	JLOC1_26450.1	332	5e-22	1 - 55	100	55 / 55	minus
Harvest35	U35_13980	603	3e-25	530 - 589	100	60 / 60	plus

Contig Sequence (603 bp)

>U35_13980 603 Hv_44K_v2
GCTTCGATCCAAACCCTCGAATCAGCAGCAGCAGCCGCGTCCATGGCACCCAAGGCGGAG
AAGAAGCCGGTGGCGACCGAGAAGTCCCCGGCGGCGAAGAAGCCGGCTGCCGGCAAGACG
GCGTCCAAGGAGGGCGGCGAGAAGAAGGGCAAGAAGAAGTCCAAGAAAAGCGTTGAGACG
TACAAGATCTACATCTTCAAGGTTCTGAAGCAGGTGCACCCCGACATCGGCATCTCCTCC
AAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTTGAGAAGCTCGCCGGCGAG
TCCGCCAAGCTCGCGCGATACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACC
TCCGTTCGCCTTGTCCTCCCCGGCGAGCTAGCCAAGCATGCTGTGTCCGAGGGCACCAAG
GCTGTCACCAAGTTCACCTCAGCCTAGGCGTCTTCCTTTGCTCATGGATGCATTGTATTA
TGTATGTAGTTAGCTGTAAGACTGTGTTCTGAATTTGTAATCTGTTGCTGCTTGTTGGTC
TGAAGAAATATTCATATTCTTACCGCTTGAAGAAATATTGCGTGTCAAAAAAAAAAAAAA
AAA

Homology of Contig U35_13980 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05900.1	154	3e-55	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g00510.2	126	1e-55
Arabidopsis v10	AT5G22880.1	145	1e-53	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145