barSeed - Barley Seed Development Database

Probe CUST_35135_PI390587928

Source Contig U35_13981

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35135_PI390587928	Hv_44K_v2	GTGGGATCAAATCTTATGATCTGGAGAAATAGCAACAGCCCTTTCAGTTCTTGCAAAAAA	562	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251792.1	617	3e-21	563 - 616	100	54 / 54	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	AK250385.1	631	3e-21	577 - 630	100	54 / 54	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_45565.1	416	3e-21	163 - 216	100	54 / 54	minus	ABC01121 ABC01122 ABC01123 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01136 ABC01137 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01151 ABC01156 ABC01157 ABC01164 ABC01166 ABC01167 ABC01177 ABC01179 ABC01184 ABC31601 ABC31617 ABC37479 ABC49951
MLOC	MLOC_45512.1	635	3e-21	188 - 241	100	54 / 54	plus	ABC01129 ABC01142 ABC01164
JLOC1	JLOC1_29579.1	383	2e-21	130 - 183	100	54 / 54	minus
JLOC1	JLOC1_29549.1	390	2e-21	188 - 241	100	54 / 54	plus
Harvest21	ABC01129	621	3e-25	550 - 609	100	60 / 60	plus	ABC01129
Harvest21	ABC01164	634	1e-23	563 - 623	98	60 / 61	plus	ABC01164
Harvest21	ABC51474	380	6e-22	326 - 379	100	54 / 54	plus
Harvest35	U35_13981	634	3e-25	563 - 622	100	60 / 60	plus
Harvest35	U35_13994	630	1e-23	558 - 618	98	60 / 61	plus
Harvest35	U35_49640	380	6e-22	326 - 379	100	54 / 54	plus
Harvest35	U35_36584	514	6e-22	136 - 189	100	54 / 54	minus
Harvest35	U35_35417	422	6e-22	177 - 230	100	54 / 54	plus

Contig Sequence (634 bp)

>U35_13981 634 Hv_44K_v2
GCACCATCCAGCGAAGCCACACACACACCAGAGCCCATCTCCCCCTCGCAGCAGCAGCAG
CCGGAGCATCATCATCCATGGCCCCCAAGGCAGCCGAGAAGAAGCCGGTGGAGAAGACCC
CGGCGGGCAAGAAGCCCAAGGCGGAGAAGAAGGTGCCGGCGTCCAAGGAGGGCGGCGGCG
ACAAGAAGGGCAAGAAGAAGTCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCA
AGGTGCTCAAGCAGGTGCACCCCGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGA
ACTCCTTCATCAACGACATCTTTGAGAAGCTCGCCGGCGAGTCGGCCAAGCTGGCGCGGT
ACAACAAGAAGCCCACCATCACGTCCCGGGAGATCCAGACCTCCGTGCGCCTCGTCCTCC
CTGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCT
CTGCCTAAGTAGTTTCTTCCCGGTGCATCGATGTTGCTGTGTAATTGTTGGTTCAGACTC
CGTTGTCATGTAACCTTTGTTTGTGGGATCAAATCTTATGATCTGGAGAAATAGCAACAG
CCCTTTCAGTTCTTGCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13981 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05900.1	154	9e-59	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g54540.1	141	1e-59
Arabidopsis v10	AT5G22880.1	145	2e-55	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145