barSeed - Barley Seed Development Database

Probe CUST_35133_PI390587928

Source Contig U35_13982

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35133_PI390587928	Hv_44K_v2	GAATTTGTGCTGCTCTCGGCAAACTAAGATTTCGGAAGTAAATCGATTCATTTCAAAAAA	572	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15958.1	408	3e-21	140 - 193	100	54 / 54	minus	ABC01141 ABC39066
JLOC1	JLOC1_10974.1	506	2e-21	238 - 291	100	54 / 54	minus
Harvest21	ABC01135	643	3e-25	573 - 632	100	60 / 60	plus
Harvest21	ABC01141	703	6e-22	624 - 677	100	54 / 54	plus	ABC01141
Harvest35	U35_13982	643	3e-25	573 - 632	100	60 / 60	plus
Harvest35	U35_13986	698	6e-22	624 - 677	100	54 / 54	plus

Contig Sequence (643 bp)

>U35_13982 643 Hv_44K_v2
GCACACCCACCTGCAAGATCCCCGCCCTCCTCCACTCTTCCGAAGCAGCGATGGCCCCCA
AGGCTGAGAAGAAGCCGGCGGCGAAGAAGCCCGCGGAGGAGGAGCCGACGACGGAGAAGG
CCGAGAAGGCCCCTGCGGCGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGGGCAAGA
CCGCCTCCAAGGAGGGCGGCGAGAAGAGGGGCCGGAAGAAGGGCAAGAAGAGCGTGGAGA
CCTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCCGACATCGGCATCTCCT
CCAAGGCCATGTCCATCATGAGCTCGCCCGCTACAACAAGAAGCCAACCATCACCTCCCG
GGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTC
CGAGGGCACCAAGGCCGTCACCAAGTTCACCTCATCTTAATTAGACTGCAATTACCTGTA
TCTGCAACTAGAACTGGTGTTAGTGCTGGCTGGAAATCGATGAATGATCGCCAATGCTTC
GTTAGTTTGTTGGCTCGTTGGTTGTAAGAAGTGAATTTGTGCTGCTCTCGGCAAACTAAG
ATTTCGGAAGTAAATCGATTCATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13982 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None