barSeed - Barley Seed Development Database

Probe CUST_35131_PI390587928

Source Contig U35_13983

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35131_PI390587928	Hv_44K_v2	GCTTCTTCTGGTGAACTTATAATTCAGAAGTAGCGATCCATTTCAGCTGTGATTAAAAAA	680	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67499.1	1636	9e-22	239 - 293	100	55 / 55	plus	ABC01136
JLOC1	JLOC1_44576.1	740	5e-22	240 - 294	100	55 / 55	plus
Harvest21	ABC01136	751	3e-25	681 - 740	100	60 / 60	plus	ABC01136
Harvest35	U35_13983	751	3e-25	681 - 740	100	60 / 60	plus

Contig Sequence (751 bp)

>U35_13983 751 Hv_44K_v2
GCCCACCAGCGCCCCCAAACCCACCAGCGAATTACCAAACCTTCACCCCCCTTCGCGAAG
GCCGAAGCAGCGATGGCCCCCAAGGCGGAGAAGAAGCCGGCGGCGAAGAAGCCCGCGGAG
GAGGAGCCGACGGCGGAGAAGGCCCCGGCGGCGAAGAAGCCCAAGGCCGAGAAGCGGCTG
CCGGCGGGGAAGACCTCCGGCAAGGACGGCGGCGAGAAGAAGGGCAAGAAGAAGGCGAAG
AAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCCGAC
ATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAG
AAGCTCGCCGGTGAGGCCGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCC
CGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTC
TCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCTTAGATCGCGTTGCCTGTATCT
AGGAGTAGTAGCGACCGTAGCTGGTTCTTTCACTTTAGTGCCTGTCAACCATGGTTACCT
GGAAGTAGTAGTGCTGGATGGGAATTGCTGAATGATTGCCAATGCTCTGTTGGCTCTTCA
GTTATAACAACTGAATTTGTGCTTCTTCTGGTGAACTTATAATTCAGAAGTAGCGATCCA
TTTCAGCTGTGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13983 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38300.1	151	3e-55	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g27760.1	154	2e-55
Arabidopsis v10	AT5G22880.1	145	3e-53	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145