barSeed - Barley Seed Development Database

Probe CUST_35128_PI390587928

Source Contig U35_13985

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35128_PI390587928	Hv_44K_v2	GTGGAAACACACTGTTTCATTGTCTCGTGAAATAGTAATGGTGCTTCTTTGATCAAAAAA	584	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78616.1	412	3e-21	122 - 175	100	54 / 54	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01151 ABC01154 ABC01157 ABC01158 ABC01161 ABC01166 ABC01167 ABC01169 ABC01177 ABC01180 ABC01181 ABC01184 ABC30555 ABC31601 ABC31617 ABC37479 ABC49951
JLOC1	JLOC1_52396.1	407	2e-21	117 - 170	100	54 / 54	minus
Harvest21	ABC01138	655	3e-25	585 - 644	100	60 / 60	plus	ABC01138
Harvest21	ABC34281	698	6e-22	504 - 557	100	54 / 54	plus
Harvest35	U35_13985	655	3e-25	585 - 644	100	60 / 60	plus
Harvest35	U35_38346	698	6e-22	504 - 557	100	54 / 54	plus

Contig Sequence (655 bp)

>U35_13985 655 Hv_44K_v2
GCACGAGGCTCCCATCGAAACACCGCCACACCCCTCCCCGTCGAAGCAAGCAGCAGCAGC
AACCAGCGGCGTCCATGGCCCCCAAGGCGGAGAAGAAGCCGGTGGCGGAGAAGGCAGAGA
AGAGCACGGCCGGGAAGAAGACCAAGGCCGAGAAGCGGCCGCCGGCGTCCAAGGAGGGCG
GCGAGAAGAAGGGCAAGAAGAAGTCCAAGAAGAGCGTCGAGACTTACAAGATCTACATCT
TCAAGGTGCTCAAGCAGGTGCACCCCGACATCGGCATCTCCTCCAAGGCCATGTCTATCA
TGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGCGC
GCTACAACAAGAAGCCCACCATCACGTCCAGGGAGATCCAGACCTCCGTCCGCCTCGTCC
TCCCCGGCGAGCTCGCCAAGCACGCTGTGTCTGAGGGCACCAAGGCCGTGACCAAGTTCA
CCTCCGCTTAGATAGTCTGTTCGCTGTCTTCTTGGTGGATCGATGGTTTTCTCTGTAATA
GTCAGCTGCTCGGATCATGTTGTCTTGTAATTTGTACTGCTTGTGTGGAAACACACTGTT
TCATTGTCTCGTGAAATAGTAATGGTGCTTCTTTGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13985 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05900.1	154	7e-58	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g00530.1	156	8e-59
Arabidopsis v10	AT5G22880.1	145	2e-55	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145