barSeed - Barley Seed Development Database

Probe CUST_35126_PI390587928

Source Contig U35_13986

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35126_PI390587928	Hv_44K_v2	TTGTGCTGCTCTCGGCAAACTAAGATTTCGGAAGTAAATCGATTCATTTCTGCTAAAAAA	627	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15958.1	408	9e-22	135 - 189	100	55 / 55	minus	ABC01141 ABC39066
JLOC1	JLOC1_10974.1	506	5e-22	233 - 287	100	55 / 55	minus
Harvest21	ABC01141	703	2e-22	628 - 682	100	55 / 55	plus	ABC01141
Harvest35	U35_13986	698	3e-25	628 - 687	100	60 / 60	plus

Contig Sequence (698 bp)

>U35_13986 698 Hv_44K_v2
GCCCACACCCACCTGCAAGATCCCCGCCCTCCTCCACTCTTCCGAAGCAGCGATGGCCCC
CAAGGCTGAGAAGAAGCCGGCGGCGAAGAAGCCCGCGGAGGAGGAGCCGACGACGGAGAA
GGCCGAGAAGGCCCCTGCGGCGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGGGCAA
GACCGCCTCCAAGGAGGGCGGCGAGAAGAGGGGCCGGAAGAAGGGCAAGAAGAGCGTGGA
GACCTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCCGACATCGGCATCTC
CTCCAAGGCCATGTCCATCATGAACTCATTCATCAACGACATCTTCGAGAAGCTCGCCGG
CGAGGCCGCCAAGCTCGCCCGCTACAACAAGAAGCCAACCATCACCTCCCGGGAGATCCA
GACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCAC
CAAGGCCGTCACCAAGTTCACCTCATCTTAATTAGACTGCAATTACCTGTATCTGCAACT
AGAACTGGTGTTAGTGCTGGCTGGAAATCGATGAATGATCGCCAATGCTTCGTTAGTTTG
TTGGCTCGTTGGTTGTAAGAAGTGAATTTGTGCTGCTCTCGGCAAACTAAGATTTCGGAA
GTAAATCGATTCATTTCTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13986 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05900.1	154	1e-55	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g27760.1	154	2e-58
Arabidopsis v10	AT5G22880.1	145	2e-53	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145