barSeed - Barley Seed Development Database

Probe CUST_35125_PI390587928

Source Contig U35_13987

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35125_PI390587928	Hv_44K_v2	GAACTTGCTGACGACCCTGTTTCAGTTAACTGGCAAAAGAGTCGACATCTTCAGAAAAAA	621	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15193.1	382	9e-22	245 - 299	100	55 / 55	plus	ABC01142
JLOC1	JLOC1_10411.1	344	5e-22	245 - 299	100	55 / 55	plus
Harvest35	U35_13987	692	3e-25	622 - 681	100	60 / 60	plus

Contig Sequence (692 bp)

>U35_13987 692 Hv_44K_v2
GGCGAAACCAGACCACCTCTCTCTCCCCGTCGAAGCATCATCAGCAGCAGGAGCATCAGC
ATCATCCATGGCCCCCAAGGCTGCCGAGAAGAAGCCGGTGGAGAAGAAGCCCAAGGCGGA
GAAGAAGGTGCCGGCGTCCAAGGAGGGCGGCGGAGGCGAGAAGAAGGGGAAGAAGAAGGC
CAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCC
GGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTT
CGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGCCAGGTACAACAAGAAGCCCACCATCAC
GTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGC
CGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCTGCCTAATTTGTTAGGCTCTT
CTTGTCTCTTTGTAACCTGTGCTGGTTGTTTGGAGAAATAGTAACAGCGCTTCCAGTTCT
TGCCACGATCCTATTTGTGCTGGTTGGATCTGTTGTGCGAGCTCGCGTTTCTCTGTCAAT
CGCTGCGGACGCCGATTATCTGAACTTGCTGACGACCCTGTTTCAGTTAACTGGCAAAAG
AGTCGACATCTTCAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_13987 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05900.1	154	7e-55	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g00510.2	126	4e-55
Arabidopsis v10	AT5G22880.1	145	3e-53	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145