barSeed - Barley Seed Development Database

Probe CUST_35123_PI390587928

Source Contig U35_49917

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35123_PI390587928	Hv_44K_v2	ATGCTCAAAAGATCAGGAAGAGTGTAATGAAATGTTTTGAAAGAGCTGCCCTTCCTAATC	553	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51239.1	2161	2e-24	690 - 749	100	60 / 60	plus	None
MLOC	MLOC_51239.2	1230	2e-24	666 - 725	100	60 / 60	plus	None
JLOC1	JLOC1_32719.1	2102	8e-25	690 - 749	100	60 / 60	plus
Harvest21	ABC51887	616	3e-25	554 - 613	100	60 / 60	plus
Harvest35	U35_49917	616	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (616 bp)

>U35_49917 616 Hv_44K_v2
CTGGTGCGCCGCGCCGTCGAGGCCGTGCGCCGCACGCCGCGCTGGCAGAGGAGGCTCGTC
TTGCTCACCGTAGGAGCTGGCACTTTAAGCTATGCTTGCCAGGATAACCGTGTTCTTCAA
ATCAGTGATGGAACGGGGGGCAAGAAAAAAGTGGTTATACTTGGAACTGGTTGGGCAGGT
GCAAGTTTCTTGAGAAATATTGACACTTCTTTGTATGATGTCCATGTGGTATCACCTCGC
AACTATTTTATGTTCACTCCTCTGTTGCCGAGTGTGACATGTGGCACGGCTGAAGCACGC
AGTATTGTGGAGCCAATTCGCAATATTGTGAGGAAGAGAGGTGGCGCATTCAGATTCTGG
GAAGCAGAGTGCTACAAGATTGATCCAACAAGCAAGAAGATCCACTGCAAATCAGGTGAT
GGGACCAATGCTGACGCCAATGGAGACTTTGTCGTGGATTATGATTACCTTGTTGTAACT
GTTGGAGCTAGACCAAATACTTTCAACACCCCAGGAGTTGTTGAAAATTGCCATTTCCTG
AAGGAAGTAGAAGATGCTCAAAAGATCAGGAAGAGTGTAATGAAATGTTTTGAAAGAGCT
GCCCTTCCTAATCTTA

Homology of Contig U35_49917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g26660.1	576	8e-123	protein\|NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi2g51830.1	573	8e-133
Arabidopsis v10	AT4G21490.1	580	1e-70	\| Symbols: NDB3 \| NAD(P)H dehydrogenase B3 \| chr4:11436495-11439326 REVERSE LENGTH=580