barSeed - Barley Seed Development Database

Probe CUST_35118_PI390587928

Source Contig U35_25964

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35118_PI390587928	Hv_44K_v2	GGAGATGTTGATCTCCTGTAACAAGTTTCCTACAACTTTTAGCTAATTTATTGAGGTCCT	538	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.449	0.699	1.112	1.571	1.082	1.117
Raw	121.841	302.602	415.839	916.747	220.539	249.043

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57042.1	1593	2e-24	1313 - 1372	100	60 / 60	plus	ABC23874
JLOC1	JLOC1_36920.2	1718	8e-25	1445 - 1504	100	60 / 60	plus
JLOC1	JLOC1_36920.1	1587	8e-25	1314 - 1373	100	60 / 60	plus
Harvest21	ABC23874	628	3e-25	539 - 598	100	60 / 60	plus	ABC23874
Harvest35	U35_25964	628	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (628 bp)

>U35_25964 628 Hv_44K_v2
GCACGAGGAAAGACTCGAAGGTCCAACTGTTTTCGAGATGTTGGAGAAAGCTTTGCAACT
CGCAGAATCCGAGGAGAGGGTCCCGGAAGAGCGCAACATAAAGCTTCTGATTGCACAGAT
GCATGTTGTCAAGGGTGACCTGGATGTTGCATCAGAGAAATTGAGAACTCTTATTAACGA
GGATCCAAGAGATTTTCGGCCTCATCTTTGCCAGGGCATTGTATATGCACTTTTGGACAA
AAAGGAGGAGGCAGACGAGCAATTTGATGTGTACAGAAGCCTTGTGCCGGATGAGTTCCC
GGACAAGAGTTTTATCAATGATGTTATACTATCAGCCAAAGTGGAGTCAAAAGATCGGCT
ACAGAAGGACTTAAGATCAGAGTACCTATCTAAAAAGTGATACTTCAGGTTTTCCTATAC
CTGAACGGCTCATCATACTTAGTGAGGTAGTCCTAGATGGTTGCGTATTTATGCGCGTAC
AGTGACACAAGTGCAACATTGCTATAAGTGAGAATGGAATATATTGAAGATAAGTGAAGG
AGATGTTGATCTCCTGTAACAAGTTTCCTACAACTTTTAGCTAATTTATTGAGGTCCTTA
TACACCAAANNAAAAAAAAAAAAAAAAA

Homology of Contig U35_25964 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g08930.1	397	1e-70	protein\|chloroplast lumen common family protein, putative, expressed
Brachypodium v1_2	Bradi2g33620.1	387	6e-75
Arabidopsis v10	None