barSeed - Barley Seed Development Database

Probe CUST_35106_PI390587928

Source Contig U35_37947

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35106_PI390587928	Hv_44K_v2	AGAATCCTCAGAGCTTGATCTAGACTCTCCCATGGCCCACCGTTTGATGCATTTTTATGA	63	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.927	1.220	2.404	2.832	0.841	0.838
Raw	7.017	15.307	27.360	52.232	4.178	4.922

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362444	3237	2e-24	1994 - 2053	100	60 / 60	plus	ABC16492
MLOC	MLOC_44139.2	2827	2e-24	1804 - 1863	100	60 / 60	plus	ABC16492
MLOC	MLOC_44139.1	3095	2e-24	1804 - 1863	100	60 / 60	plus	ABC16492
JLOC1	JLOC1_28576.2	2869	8e-25	1573 - 1632	100	60 / 60	plus
JLOC1	JLOC1_28576.1	3108	8e-25	1812 - 1871	100	60 / 60	plus
Harvest21	ABC33708	143	3e-25	64 - 123	100	60 / 60	plus
Harvest35	U35_37947	143	3e-25	64 - 123	100	60 / 60	plus

Contig Sequence (143 bp)

>U35_37947 143 Hv_44K_v2
GGTTGCTCAGTATGCCTATGGTTTAGCTTCTCTTGGACACCAGTTGCATGCACTTGGTTC
TGTAGAATCCTCAGAGCTTGATCTAGACTCTCCCATGGCCCACCGTTTGATGCATTTTTA
TGAGCGGATGGGCGACACACTTG

Homology of Contig U35_37947 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None