barSeed - Barley Seed Development Database

Probe CUST_35097_PI390587928

Source Contig U35_13993

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35097_PI390587928	Hv_44K_v2	TCGAGGCTCCTCGTAGTTTGTAATTGTTTTCGTTTGTTATACAATGAACAATGGATGGAT	567	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.677	2.113	1.022	0.813	0.355	0.345
Raw	4662.973	3321.870	1414.120	1746.904	270.741	287.660

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62416.1	659	2e-24	309 - 368	100	60 / 60	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_62417.1	2292	2e-24	309 - 368	100	60 / 60	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_62417.2	2260	2e-24	309 - 368	100	60 / 60	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_62417.3	2294	2e-24	309 - 368	100	60 / 60	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	MLOC_62417.4	2294	2e-24	309 - 368	100	60 / 60	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
JLOC1	JLOC1_40846.8	2314	8e-25	1947 - 2006	100	60 / 60	minus
JLOC1	JLOC1_40846.7	2298	8e-25	1931 - 1990	100	60 / 60	minus
JLOC1	JLOC1_40846.6	2216	8e-25	1849 - 1908	100	60 / 60	minus
JLOC1	JLOC1_40846.5	2274	8e-25	1907 - 1966	100	60 / 60	minus
JLOC1	JLOC1_40846.4	2201	8e-25	1834 - 1893	100	60 / 60	minus
JLOC1	JLOC1_40846.3	2219	8e-25	1852 - 1911	100	60 / 60	minus
JLOC1	JLOC1_40846.2	2237	8e-25	1870 - 1929	100	60 / 60	minus
JLOC1	JLOC1_40846.1	2176	8e-25	1809 - 1868	100	60 / 60	minus
Harvest21	ABC01149	626	3e-25	567 - 626	100	60 / 60	plus
Harvest35	U35_13993	627	3e-25	568 - 627	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_13993 627 Hv_44K_v2
CTCTCCGATCATCCTCCTCCTAGCCGCAACCGCAACCAACCGTCCTCTCGATCCGTCCGT
GATGGCGCCCAAGGCGGAGAAGAAGCCCGCGGAGAAGAAGCCGGCAGCGGAGGAGAAGGC
CGAGAAGGCGCCCAAGGGGGAGAAGAAGCCCAAGGCGGAGAAGCGGCTGCCGGCGGCCAA
GGAGGGCGGCGGCGGCGGCTCGGACAAGAAGGCCAAGAAGAAGGCCAAGAAGAGCGTGGA
GACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTTCACCCGGACATCGGCATCTC
CTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCGCA
GGAGGCCGCCAAGCTCGCCAGGTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCA
GACCTCCGTGCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCAC
CAAGGCCGTCACCAAGTTCACCTCCTCCTAGATAGATAGCTTCTCTCGTCTCGTCTCGTC
GTGTGTTTGACGATCGATCGTCAGGGATCGAGGCTCCTCGTAGTTTGTAATTGTTTTCGT
TTGTTATACAATGAACAATGGATGGAT

Homology of Contig U35_13993 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62230.1	140	2e-55	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g23230.1	148	5e-56
Arabidopsis v10	AT5G59910.1	150	2e-54	\| Symbols: HTB4 \| Histone superfamily protein \| chr5:24127206-24127658 FORWARD LENGTH=150