barSeed - Barley Seed Development Database

Probe CUST_35096_PI390587928

Source Contig U35_10001

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35096_PI390587928	Hv_44K_v2	ATCTCTAACTGGGTCCTGTACAGTTTGTCCTGCGTAGGAGATAGATCGTTGCACTGATTT	793	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.257	5.009	1.420	0.802	0.389	0.648
Raw	612.235	1519.216	350.826	316.447	56.733	100.978

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368770	1888	2e-24	1767 - 1826	100	60 / 60	plus	ABC20753
MLOC	MLOC_70143.1	5565	2e-24	1942 - 2001	100	60 / 60	plus	ABC20753
MLOC	MLOC_70142.3	1627	2e-24	1523 - 1582	100	60 / 60	plus	ABC20753
MLOC	MLOC_70142.2	3564	2e-24	2391 - 2450	100	60 / 60	plus	ABC20753
JLOC1	JLOC1_46533.2	3431	8e-25	2267 - 2326	100	60 / 60	plus
JLOC1	JLOC1_46533.1	3663	8e-25	2499 - 2558	100	60 / 60	plus
JLOC1	JLOC1_46534.2	3038	6e-21	2447 - 2499	100	53 / 53	minus
JLOC1	JLOC1_46534.1	3956	6e-21	3365 - 3417	100	53 / 53	minus
Harvest21	ABC20753	931	3e-25	794 - 853	100	60 / 60	plus	ABC20753
Harvest35	U35_10001	931	3e-25	794 - 853	100	60 / 60	plus

Contig Sequence (931 bp)

>U35_10001 931 Hv_44K_v2
GGCCTGCAGGTTTTGGAATTATTTACGTATGGGAATGGATGCCCAAGTGTCTTATGCATT
TCATTCTCAGAGGAAATTGCATCCAGAGAAATTCAAGAATCAGTTGTCTAATCAGAAAAC
ATATTTGAAGCTGGCATGCACACAAGGGTGGTTCTGTGCCTCTTTAAGCCATCCAATGTC
ACGGAATATCGCTCACCTTGCAAAGGTAAAGATAATGAAGAAATCTGGAAAATGGGAAAC
CTTGGAAATTCCACAGAGTATCCGGTCCATTGTCTGTCTCAATTTACCCAGCTTCTCTGG
TGGACTGAACCCCTGGGGAACACCAAGTAAGAGGAAGCAAAGAAAAAGAGACTTGGTACT
GCCTCCACTTGTGGATGATGGCCTTCTGGAGATTGTGGGATTCAAAGATGCTTGGCATGG
CCTTGTTTTGTTATCTCCGAAAGGCCATGGCACCCGTCTTGCTCAGGCCCATCGTGTCCG
ATTCAAATTTCACAGGGGTGCAACTGACCATGCCTACATGAGAATCGACGGTGAGCCCTG
GAAGCAGCCTCTTCCACAGGAGGATGACGGCAAGGTCGTCGTGGAGATATCCCATGCTGG
GCAGGTCAAGATGCTCGCGACCAAAGACTGTATAGCTAAAGGCATCAGCGACTCCCCGGC
CATGTCAACAGCTTGCACAGATTCCAGCTCCAGCGATGACTCAGACGATGACTTCACAGA
GGAGCGGAGGAACTTCGGCGCTGCCTTGTCGTTCCGCTACATGAATGATGTGAAAAAAAC
AGTAGAAGCTTGAATCTCTAACTGGGTCCTGTACAGTTTGTCCTGCGTAGGAGATAGATC
GTTGCACTGATTTTGTGGAACAGTGGACGTTGCCCCTGTAAGATCCCTTTGCTGGCAAGG
TTGTTTGTGTACGACAAAAAAAAAAAAAAAA

Homology of Contig U35_10001 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g57420.1	488	5e-144	protein\|diacylglycerol kinase, putative, expressed
Brachypodium v1_2	Bradi2g51870.1	485	1e-149
Arabidopsis v10	AT2G20900.1	509	1e-107	\| Symbols: DGK5, ATDGK5 \| diacylglycerol kinase 5 \| chr2:8989412-8992798 REVERSE LENGTH=509