barSeed - Barley Seed Development Database

Probe CUST_35094_PI390587928

Source Contig U35_13994

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35094_PI390587928	Hv_44K_v2	TGGGATCAAATCTTATGATCTGGAGAAATAGCAACAGCCCTTTCAGTTCTTGCCAAAAAA	558	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45565.1	416	9e-22	161 - 215	100	55 / 55	minus	ABC01121 ABC01122 ABC01123 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01136 ABC01137 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01151 ABC01156 ABC01157 ABC01164 ABC01166 ABC01167 ABC01177 ABC01179 ABC01184 ABC31601 ABC31617 ABC37479 ABC49951
MLOC	MLOC_45512.1	635	9e-22	189 - 243	100	55 / 55	plus	ABC01129 ABC01142 ABC01164
MLOC	AK251792.1	617	3e-21	564 - 617	100	54 / 54	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
MLOC	AK250385.1	631	3e-21	578 - 631	100	54 / 54	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
JLOC1	JLOC1_29579.1	383	5e-22	128 - 182	100	55 / 55	minus
JLOC1	JLOC1_29549.1	390	5e-22	189 - 243	100	55 / 55	plus
Harvest21	ABC01164	634	3e-25	564 - 623	100	60 / 60	plus	ABC01164
Harvest21	ABC01129	621	1e-23	551 - 610	98	59 / 60	plus	ABC01129
Harvest21	ABC51474	380	6e-22	327 - 380	100	54 / 54	plus
Harvest35	U35_13994	630	3e-25	559 - 618	100	60 / 60	plus
Harvest35	U35_13981	634	1e-23	564 - 623	98	59 / 60	plus
Harvest35	U35_36584	514	5e-23	133 - 188	100	56 / 56	minus
Harvest35	U35_35417	422	2e-22	178 - 232	100	55 / 55	plus
Harvest35	U35_49640	380	6e-22	327 - 380	100	54 / 54	plus

Contig Sequence (630 bp)

>U35_13994 630 Hv_44K_v2
TCCAGCGAAGCCACACACAAACACACCAGACCACCTCTCCCTCTCCCCGTCGAAGCAGCA
TCATCATCATCCATGGCCCCGAAGGCAGCGGAGAAGAAGCCGGTGGAGAAGACTCCGGCG
GGCAAGAAGCCCAAGGCGGAGAAGAAGGTGCCGGCGTCCAAGGATGGCGGCGGCGACAAG
AAGGGCAAGAAGAAGTCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTG
CTCAAGCAGGTGCACCCTGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCC
TTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCTGCCAAGCTGGCGCGGTACAAC
AAGAAGCCCACCATCACGTCCCGGGAGATCCAAACCTCCGTCCGCCTCGTCCTCCCCGGC
GAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCTGCC
TAAACAGTTTCTTCCCGTTGCATCGATGTTGCTGTGTAATTGTTGGTTCAGACTCTGTCG
TCTTGTAACCTTTGTTTGTGGGATCAAATCTTATGATCTGGAGAAATAGCAACAGCCCTT
TCAGTTCTTGCCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13994 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05900.1	154	9e-59	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g54540.1	141	1e-59
Arabidopsis v10	AT5G22880.1	145	2e-55	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145